Merge pull request #2 from Novartis/issue-2024-course

Updates for 2024 edition course

.github/workflows/build-book.yaml

@@ -33,7 +33,7 @@ jobs:
         shell: Rscript {0}
         run: |
           cmdstanr::check_cmdstan_toolchain(fix = TRUE)
-          cmdstanr::install_cmdstan()
+          cmdstanr::install_cmdstan(version = "2.32.2")
 
       - uses: quarto-dev/quarto-actions/setup@v2
 

_quarto-public.yml

@@ -1,6 +1,5 @@
 project:
   output-dir: docs/public
-  post-render: src/move_videos.R # workaround for Quarto issue https://github.com/quarto-dev/quarto-cli/issues/3892
 
 book:
   repo-url: https://github.com/Novartis/bamdd/
@@ -11,12 +10,15 @@ book:
       chapters:
       - src/01a_introduction.qmd
       - src/01b_basic_workflow.qmd
+      - src/01c_priors.qmd
     - part: src/02_case_studies.qmd
       chapters:
       - src/02a_meta_analysis.qmd
       - src/02ab_meta_analysis_trtdiff.qmd
+      - src/02ac_meta_analysis_strata.qmd
       - src/02b_dose_finding.qmd
       - src/02c_dose_escalation.qmd
+      - src/02cb_tte_dose_escalation.qmd
       - src/02e_multiple_imputation.qmd
       - src/02g_longitudinal.qmd
       - src/02h_mmrm.qmd

_quarto.yml

@@ -13,7 +13,7 @@ execute:
    freeze: false
 
 book:
-  title: "(Bayesian) Applied Modelling in Drug Development (BAMDD)"
+  title: "Applied Modelling in Drug Development"
   subtitle: "Flexible regression modelling in Stan via `brms`"
   repo-actions: [issue]
   repo-branch: master
@@ -25,6 +25,8 @@ book:
   - Lukas Widmer - <[email protected]>
   - Andrew Bean - <[email protected]>
   date: today
+  sidebar:
+    logo: bamdd_logo.png
 
 # we use per chapter references
 bibliography:

index.qmd

@@ -34,6 +34,10 @@ appropiate. Key changes to the web-site are tracked here:
 
 
 ::: {.content-visible when-profile="public"}
+- 29th April 2024: Third edition course from Paul Bürkner with the new
+  case studies on probability of success, meta-analytic priors with
+  covariates & time-to-event modelling in Oncology phase I
+  dose-escalation. Pre-read version.
 - 19th April 2024: First public version at [opensource.nibr.com/bamdd](http://opensource.nibr.com/bamdd)
 - 5th January 2024: Release web-site in more modern quarto book
   based format