python312Packages.bayeux-ml: init at 0.1.14

pkgs/development/python-modules/bayeux-ml/default.nix

@@ -0,0 +1,67 @@
+{
+  lib,
+  buildPythonPackage,
+  fetchFromGitHub,
+
+  # build-system
+  flit-core,
+
+  # dependencies
+  arviz,
+  blackjax,
+  flowmc,
+  jax,
+  jaxopt,
+  numpyro,
+  optax,
+  optimistix,
+  oryx,
+  pymc,
+  tensorflow-probability,
+
+  # tests
+  pytestCheckHook,
+}:
+
+buildPythonPackage rec {
+  pname = "bayeux-ml";
+  version = "0.1.14";
+  pyproject = true;
+
+  src = fetchFromGitHub {
+    owner = "jax-ml";
+    repo = "bayeux";
+    rev = "refs/tags/v${version}";
+    hash = "sha256-dnfs5AiKdoYeLmgWqbvrWrbp77kXiXUEIhUsrDYQXYE=";
+  };
+
+  build-system = [ flit-core ];
+
+  dependencies = [
+    arviz
+    blackjax
+    flowmc
+    jax
+    jaxopt
+    numpyro
+    optax
+    optimistix
+    oryx
+    pymc
+    tensorflow-probability
+  ];
+
+  pythonImportsCheck = [ "bayeux_ml" ];
+
+  nativeCheckInputs = [
+    pytestCheckHook
+  ];
+
+  meta = {
+    description = "State of the art inference for your bayesian models";
+    homepage = "https://github.com/jax-ml/bayeux";
+    changelog = "https://github.com/jax-ml/bayeux/blob/${src.rev}/CHANGELOG.md";
+    license = lib.licenses.asl20;
+    maintainers = with lib.maintainers; [ GaetanLepage ];
+  };
+}

pkgs/development/python-modules/inference-gym/default.nix

@@ -0,0 +1,32 @@
+{
+  lib,
+  buildPythonPackage,
+  fetchPypi,
+}:
+
+buildPythonPackage rec {
+  pname = "inference-gym";
+  version = "0.0.4";
+  format = "wheel";
+
+  src = fetchPypi {
+    inherit format version;
+    pname = "inference_gym";
+    dist = "py3";
+    python = "py3";
+    hash = "sha256-bpi/IB8PuLPIKoTjmBeVl/4XGvE/yyG8WYxNqNcruvE=";
+  };
+
+  pythonImportsCheck = [ "inference_gym" ];
+
+  # The package does not ship any test.
+  doCheck = false;
+
+  meta = {
+    description = "Oryx is a library for probabilistic programming and deep learning built on top of Jax";
+    homepage = "https://github.com/jax-ml/oryx";
+    changelog = "https://github.com/jax-ml/oryx/releases/tag/v${version}";
+    license = lib.licenses.asl20;
+    maintainers = with lib.maintainers; [ GaetanLepage ];
+  };
+}

pkgs/development/python-modules/lineax/default.nix

@@ -0,0 +1,66 @@
+{
+  lib,
+  buildPythonPackage,
+  fetchFromGitHub,
+
+  # build-system
+  hatchling,
+
+  # dependencies
+  equinox,
+  jax,
+  jaxtyping,
+  typing-extensions,
+
+  # tests
+  beartype,
+  pytest,
+  python,
+}:
+
+buildPythonPackage rec {
+  pname = "lineax";
+  version = "0.0.6";
+  pyproject = true;
+
+  src = fetchFromGitHub {
+    owner = "patrick-kidger";
+    repo = "lineax";
+    rev = "refs/tags/v${version}";
+    hash = "sha256-rM3H+q75F98eEIJkEszWgxD5C5vGK5RlYtVv8GD/VC0=";
+  };
+
+  build-system = [ hatchling ];
+
+  dependencies = [
+    equinox
+    jax
+    jaxtyping
+    typing-extensions
+  ];
+
+  pythonImportsCheck = [ "lineax" ];
+
+  nativeCheckInputs = [
+    beartype
+    pytest
+  ];
+
+  # Intentionaly not using pytest directly as it leads to JAX out-of-memory'ing
+  # https://github.com/patrick-kidger/lineax/blob/1909d190c1963d5f2d991508c1b2714f2266048b/tests/README.md
+  checkPhase = ''
+    runHook preCheck
+
+    ${python.interpreter} -m tests
+
+    runHook postCheck
+  '';
+
+  meta = {
+    description = "Linear solvers in JAX and Equinox";
+    homepage = "https://github.com/patrick-kidger/lineax";
+    changelog = "https://github.com/patrick-kidger/lineax/releases/tag/v${version}";
+    license = lib.licenses.asl20;
+    maintainers = with lib.maintainers; [ GaetanLepage ];
+  };
+}

pkgs/development/python-modules/optimistix/default.nix

@@ -0,0 +1,63 @@
+{
+  lib,
+  buildPythonPackage,
+  fetchFromGitHub,
+
+  # build-system
+  hatchling,
+
+  # dependencies
+  equinox,
+  jax,
+  jaxtyping,
+  lineax,
+  typing-extensions,
+
+  # checks
+  beartype,
+  jaxlib,
+  optax,
+  pytestCheckHook,
+  pytest-xdist,
+}:
+
+buildPythonPackage rec {
+  pname = "optimistix";
+  version = "0.0.8";
+  pyproject = true;
+
+  src = fetchFromGitHub {
+    owner = "patrick-kidger";
+    repo = "optimistix";
+    rev = "refs/tags/v${version}";
+    hash = "sha256-0ehNApiBoiAb8LFBW81ZCRPsjTVQG8zRTVSAp7oHF8w=";
+  };
+
+  build-system = [ hatchling ];
+
+  dependencies = [
+    equinox
+    jax
+    jaxtyping
+    lineax
+    typing-extensions
+  ];
+
+  pythonImportsCheck = [ "optimistix" ];
+
+  nativeCheckInputs = [
+    beartype
+    jaxlib
+    optax
+    pytestCheckHook
+    pytest-xdist
+  ];
+
+  meta = {
+    description = "Nonlinear optimisation (root-finding, least squares, ...) in JAX+Equinox";
+    homepage = "https://github.com/patrick-kidger/optimistix";
+    changelog = "https://github.com/patrick-kidger/optimistix/releases/tag/v${version}";
+    license = lib.licenses.asl20;
+    maintainers = with lib.maintainers; [ GaetanLepage ];
+  };
+}

pkgs/development/python-modules/oryx/default.nix

@@ -0,0 +1,53 @@
+{
+  lib,
+  buildPythonPackage,
+  fetchFromGitHub,
+
+  # build-system
+  poetry-core,
+
+  # dependencies
+  jax,
+  jaxlib,
+  tensorflow-probability,
+
+  # tests
+  inference-gym,
+  pytestCheckHook,
+}:
+
+buildPythonPackage rec {
+  pname = "oryx";
+  version = "0.2.7";
+  pyproject = true;
+
+  src = fetchFromGitHub {
+    owner = "jax-ml";
+    repo = "oryx";
+    rev = "refs/tags/v${version}";
+    hash = "sha256-1n7ogGuFNAeOyXWe0/pAouhg2+aA3MXxlCcsrfqRTdU=";
+  };
+
+  build-system = [ poetry-core ];
+
+  dependencies = [
+    jax
+    jaxlib
+    tensorflow-probability
+  ];
+
+  pythonImportsCheck = [ "oryx" ];
+
+  nativeCheckInputs = [
+    inference-gym
+    pytestCheckHook
+  ];
+
+  meta = {
+    description = "Oryx is a library for probabilistic programming and deep learning built on top of Jax";
+    homepage = "https://github.com/jax-ml/oryx";
+    changelog = "https://github.com/jax-ml/oryx/releases/tag/v${version}";
+    license = lib.licenses.asl20;
+    maintainers = with lib.maintainers; [ GaetanLepage ];
+  };
+}

pkgs/top-level/python-packages.nix

@@ -1496,6 +1496,8 @@ self: super: with self; {
 
   baycomp = callPackage ../development/python-modules/baycomp { };
 
+  bayeux-ml = callPackage ../development/python-modules/bayeux-ml { };
+
   bayesian-optimization = callPackage ../development/python-modules/bayesian-optimization { };
 
   bayespy = callPackage ../development/python-modules/bayespy { };
@@ -6071,6 +6073,8 @@ self: super: with self; {
 
   inequality = callPackage ../development/python-modules/inequality { };
 
+  inference-gym = callPackage ../development/python-modules/inference-gym { };
+
   infinity = callPackage ../development/python-modules/infinity { };
 
   inflect = callPackage ../development/python-modules/inflect { };
@@ -7226,6 +7230,8 @@ self: super: with self; {
 
   linear-operator = callPackage ../development/python-modules/linear-operator { };
 
+  lineax = callPackage ../development/python-modules/lineax { };
+
   linecache2 = callPackage ../development/python-modules/linecache2 { };
 
   lineedit = callPackage ../development/python-modules/lineedit { };
@@ -9408,6 +9414,8 @@ self: super: with self; {
 
   optax = callPackage ../development/python-modules/optax { };
 
+  optimistix = callPackage ../development/python-modules/optimistix { };
+
   optimum = callPackage ../development/python-modules/optimum { };
 
   optree = callPackage ../development/python-modules/optree { };
@@ -9450,6 +9458,8 @@ self: super: with self; {
 
   orvibo = callPackage ../development/python-modules/orvibo { };
 
+  oryx = callPackage ../development/python-modules/oryx { };
+
   os-client-config = callPackage ../development/python-modules/os-client-config { };
 
   os-service-types = callPackage ../development/python-modules/os-service-types { };