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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,237 +1,17 @@ | ||
| name: Profile QA - full repository | ||
| on: pull_request | ||
| on: [pull_request] | ||
|
|
||
| jobs: | ||
| validate-all: | ||
| nictiz-r4-qa-full: | ||
| name: Loose QA on the entire repo | ||
| runs-on: ubuntu-latest | ||
| steps: | ||
| - name: Checkout code | ||
| uses: actions/checkout@v2 | ||
| uses: actions/checkout@v3 | ||
| with: | ||
| fetch-depth: 0 | ||
|
|
||
| - name: Get profiles and extensions | ||
| id: get-resources | ||
| run: | | ||
| changed_only=0 | ||
| source util/qaAutomation/getresources.sh | ||
| echo "::set-output name=zib_profiles::"$zib_profiles | ||
| echo "::set-output name=zib_extensions::"$zib_extensions | ||
| echo "::set-output name=nlcore_profiles::"$nlcore_profiles | ||
| echo "::set-output name=nlcore_extensions::"$nlcore_extensions | ||
| echo "::set-output name=other_profiles::"$other_profiles | ||
| echo "::set-output name=conceptmaps::"$conceptmaps | ||
| echo "::set-output name=other_terminology::"$other_terminology | ||
| echo "::set-output name=examples::"$examples | ||
| - name: Restore validator cache | ||
| uses: actions/cache@v2 | ||
| with: | ||
| path: ~/.fhir/packages | ||
| key: fhir-cache | ||
|
|
||
| - name: Validate zib profiles | ||
| id: validate-zib-profiles | ||
| uses: pieter-edelman-nictiz/[email protected] | ||
| with: | ||
| version: "4.0" | ||
| ig: resources/ qa/ | ||
| recurse: true | ||
| profile: http://nictiz.nl/fhir/StructureDefinition/ProfilingGuidelinesR4-StructureDefinitions-Zib-Profiles | ||
| source: ${{ steps.get-resources.outputs.zib_profiles }} | ||
| ignored-issues: known-issues.yml | ||
| tx: n/a | ||
| continue-on-error: true | ||
| - name: Validate zib extensions | ||
| id: validate-zib-extensions | ||
| uses: pieter-edelman-nictiz/[email protected] | ||
| with: | ||
| version: "4.0" | ||
| ig: resources/ qa/ | ||
| recurse: true | ||
| profile: http://nictiz.nl/fhir/StructureDefinition/ProfilingGuidelinesR4-StructureDefinitions-Zib-Extensions | ||
| source: ${{ steps.get-resources.outputs.zib_extensions }} | ||
| ignored-issues: known-issues.yml | ||
| tx: n/a | ||
| continue-on-error: true | ||
| - name: Validate nl-core profiles | ||
| id: validate-nl-core-profiles | ||
| uses: pieter-edelman-nictiz/[email protected] | ||
| with: | ||
| version: "4.0" | ||
| ig: resources/ qa/ | ||
| recurse: true | ||
| profile: http://nictiz.nl/fhir/StructureDefinition/ProfilingGuidelinesR4-StructureDefinitions-NlCore-Profiles | ||
| source: ${{ steps.get-resources.outputs.nlcore_profiles }} | ||
| ignored-issues: known-issues.yml | ||
| tx: n/a | ||
| continue-on-error: true | ||
| - name: Validate nl-core extensions | ||
| id: validate-nl-core-extensions | ||
| uses: pieter-edelman-nictiz/[email protected] | ||
| with: | ||
| version: "4.0" | ||
| ig: ig/ | ||
| recurse: true | ||
| profile: http://nictiz.nl/fhir/StructureDefinition/ProfilingGuidelinesR4-StructureDefinitions-NlCore-Extensions | ||
| source: ${{ steps.get-resources.outputs.nlcore_extensions }} | ||
| ignored-issues: known-issues.yml | ||
| tx: n/a | ||
| continue-on-error: true | ||
| - name: Validate other profiles | ||
| id: validate-other-profiles | ||
| uses: pieter-edelman-nictiz/[email protected] | ||
| with: | ||
| version: "4.0" | ||
| ig: resources/ qa/ | ||
| recurse: true | ||
| profile: http://nictiz.nl/fhir/StructureDefinition/ProfilingGuidelinesR4-StructureDefinitions | ||
| source: ${{ steps.get-resources.outputs.other_profiles }} | ||
| ignored-issues: known-issues.yml | ||
| tx: n/a | ||
| continue-on-error: true | ||
| - name: Validate ConceptMaps | ||
| id: validate-conceptmaps | ||
| uses: pieter-edelman-nictiz/[email protected] | ||
| - name: Zib2020 QA | ||
| uses: Nictiz/Nictiz-R4-QA@main | ||
| with: | ||
| version: "4.0" | ||
| ig: resources/ qa/ | ||
| recurse: true | ||
| profile: http://nictiz.nl/fhir/StructureDefinition/ProfilingGuidelinesR4-ConceptMaps | ||
| source: ${{ steps.get-resources.outputs.conceptmaps }} | ||
| ignored-issues: known-issues.yml | ||
| tx: n/a | ||
| continue-on-error: true | ||
| - name: Validate other terminology | ||
| id: validate-other-terminology | ||
| uses: pieter-edelman-nictiz/[email protected] | ||
| with: | ||
| version: "4.0" | ||
| ig: resources/ qa/ | ||
| recurse: true | ||
| source: ${{ steps.get-resources.outputs.other_terminology }} | ||
| ignored-issues: known-issues.yml | ||
| tx: n/a | ||
| continue-on-error: true | ||
| - name: Validate examples | ||
| id: validate-examples | ||
| uses: pieter-edelman-nictiz/[email protected] | ||
| with: | ||
| version: "4.0" | ||
| ig: resources/ | ||
| recurse: true | ||
| source: ${{ steps.get-resources.outputs.examples }} | ||
| ignored-issues: known-issues.yml | ||
| tx: n/a | ||
| continue-on-error: true | ||
| - name: Collect results | ||
| id: collect-statistics | ||
| shell: python | ||
| run: | | ||
| import json, sys | ||
| success = True | ||
| github_report = "" | ||
| def printStatistics(name, key): | ||
| global success, github_report, markdown_report | ||
| global steps_data | ||
| step_data = steps_data[key] | ||
| if step_data["outputs"]["was-skipped"] == 'true': | ||
| out_str = f'Test "{name}" was skipped' | ||
| return | ||
| step_success = (step_data["outcome"] == "success") | ||
| success = success and step_success | ||
| with open(step_data["outputs"]["stats-file"], 'r') as sf: | ||
| stats = json.load(sf) | ||
| out_str = f'"{name}" {"succeeded" if step_success else "failed"} with {stats["fatal"]} fatal messages, {stats["error"]} errors, {stats["warning"]} warnings and {stats["information"]} information messages.' | ||
| if not step_success: | ||
| github_report += f"::error::{out_str}%0A" | ||
| elif stats["warning"] > 0: | ||
| github_report += f"::warning::{out_str}%0A" | ||
| else: | ||
| github_report += f"\033[1;32mOk:\033[0m {out_str}%0A" | ||
| steps_data = json.loads("""${{ toJSON(steps) }}""") | ||
| printStatistics("Validate zib profiles", "validate-zib-profiles") | ||
| printStatistics("Validate zib extensions", "validate-zib-extensions") | ||
| printStatistics("Validate nl-core profiles", "validate-nl-core-profiles") | ||
| printStatistics("Validate nl-core extensions", "validate-nl-core-extensions") | ||
| printStatistics("Validate other profiles", "validate-other-profiles") | ||
| printStatistics("Validate ConceptMaps", "validate-conceptmaps") | ||
| printStatistics("Validate other terminology", "validate-other-terminology") | ||
| printStatistics("Validate examples", "validate-examples") | ||
| print(f'::set-output name=result_status::{0 if success else 1}') | ||
| print(f'::set-output name=github_report::{github_report}') | ||
| - name: Print results | ||
| run: | | ||
| echo "${{ steps.collect-statistics.outputs.github_report }}" | ||
| exit ${{ steps.collect-statistics.outputs.result_status }} | ||
| zib-compliance-all: | ||
| runs-on: ubuntu-latest | ||
| steps: | ||
| - name: Checkout code | ||
| uses: actions/checkout@v2 | ||
| with: | ||
| fetch-depth: 0 | ||
| - name: Get profiles and extensions | ||
| id: get-resources | ||
| run: | | ||
| changed_only=0 | ||
| source util/qaAutomation/getresources.sh | ||
| echo "::set-output name=zib_profiles::"$zib_profiles | ||
| echo "::set-output name=zib_extensions::"$zib_extensions | ||
| - name: Install Firely Terminal | ||
| id: install-firely-terminal | ||
| run: dotnet tool install -g --version 2.0.0 firely.terminal | ||
| - name: Create snapshots in JSON format | ||
| id: create-snapshots | ||
| run: bash util/qaAutomation/generatezibsnapshots.sh ${{ steps.get-resources.outputs.zib_profiles }} ${{ steps.get-resources.outputs.zib_extensions }} | ||
| - name: Check zib compliance | ||
| id: check-zib-compliance | ||
| uses: pieter-edelman-nictiz/zib-compliance-fhir@action | ||
| continue-on-error: true | ||
| with: | ||
| max-file: qa/zibs2020.max | ||
| structuredefinitions: snapshots/* | ||
| zib-release: 2020 | ||
| fail-at: warning | ||
| check-missing: mapped-only | ||
| zib-deviations: known-issues.yml | ||
| - name: Collect results | ||
| id: collect-statistics | ||
| shell: python | ||
| run: | | ||
| import json, sys | ||
| github_report = "" | ||
| success = ("${{ steps.check-zib-compliance.outcome }}" == "success") | ||
| with open("${{ steps.check-zib-compliance.outputs.stats-file }}", 'r') as sf: | ||
| if "${{ steps.check-zib-compliance.outputs.was-skipped }}" == 'true': | ||
| out_str = f'Zib compliance check was skipped' | ||
| else: | ||
| stats = json.load(sf) | ||
| out_str = f'Zib compliance check {"succeeded" if success else "failed"} with {stats["issueStats"]["error"]} errors and {stats["issueStats"]["warning"]} warnings.' | ||
| if not success: | ||
| github_report += f"::error::{out_str}%0A" | ||
| else: | ||
| github_report += f"\033[1;32mOk:\033[0m {out_str}%0A" | ||
| print(f'::set-output name=result_status::{0 if success else 1}') | ||
| print(f'::set-output name=github_report::{github_report}') | ||
| - name: Print results | ||
| run: | | ||
| echo "${{ steps.collect-statistics.outputs.github_report }}" | ||
| exit ${{ steps.collect-statistics.outputs.result_status }} | ||
| changed-only: false | ||
| no-tx: true |
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