Updated source example

NeurodataWithoutBorders · Sep 23, 2022 · 145b772 · 145b772
1 parent 524453f
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Showing 2 changed files with 6 additions and 5 deletions.
diff --git a/README.md b/README.md
@@ -11,7 +11,6 @@ pip install .
 ## Usage
 
 ```python
-
 from pynwb.file import NWBFile, Subject
 from ndx_labmetadata_example import LabMetaDataExtensionExample
 from pynwb import NWBHDF5IO
@@ -37,11 +36,12 @@ lab_meta_data = LabMetaDataExtensionExample(tissue_preparation="Example tissue p
 nwbfile.add_lab_meta_data(lab_meta_data=lab_meta_data)
 
 # Write the file to disk
-with NWBHDF5IO(path=self.filename, mode='a') as io:
+filename = 'testfile.nwb'
+with NWBHDF5IO(path=filename, mode='a') as io:
     io.write(nwbfile)
 
 # Read the file from disk
-with NWBHDF5IO(path=self.filename, mode='r') as io:
+with NWBHDF5IO(path=filename, mode='r') as io:
     in_nwbfile = io.read()
     in_lab_meta_data = in_nwbfile.get_lab_meta_data(lab_meta_data.name)
     assert lab_meta_data.tissue_preparation == in_lab_meta_data.tissue_preparation

diff --git a/src/pynwb/tests/test_labmetadata_example.py b/src/pynwb/tests/test_labmetadata_example.py
@@ -85,11 +85,12 @@ def test_readme_script(self):
         nwbfile.add_lab_meta_data(lab_meta_data=lab_meta_data)
 
         # Write the file to disk
-        with NWBHDF5IO(path=self.filename, mode='a') as io:
+        filename = 'testfile.nwb'
+        with NWBHDF5IO(path=filename, mode='a') as io:
             io.write(nwbfile)
 
         # Read the file from disk
-        with NWBHDF5IO(path=self.filename, mode='r') as io:
+        with NWBHDF5IO(path=filename, mode='r') as io:
             in_nwbfile = io.read()
             in_lab_meta_data = in_nwbfile.get_lab_meta_data(lab_meta_data.name)
             assert lab_meta_data.tissue_preparation == in_lab_meta_data.tissue_preparation