add PyPi information

Neural-Systems-at-UIO · Aug 21, 2024 · f2e80d4 · f2e80d4
1 parent 2ba13ed
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Showing 3 changed files with 11 additions and 7 deletions.
diff --git a/PyNutil/main.py b/PyNutil/main.py
@@ -1,4 +1,3 @@
-from .metadata import metadata_loader
 from .read_and_write import read_atlas_volume, write_points_to_meshview
 from .coordinate_extraction import folder_to_atlas_space
 from .counting_and_load import label_points, pixel_count_per_region

diff --git a/README.md b/README.md
@@ -5,7 +5,10 @@ PyNutil is a Python library for brain-wide quantification and spatial analysis o
 
 For more information about the QUINT workflow:
 https://quint-workflow.readthedocs.io/en/latest/ 
-
+# Installation
+```
+pip install PyNutil
+```
 # Usage
 As input, PyNutil requires:
 1. An alignment JSON created with the QuickNII or VisuAlign software

diff --git a/setup.py b/setup.py
@@ -5,18 +5,20 @@
 
 setup(
     name="PyNutil",
-    version='0.1.4',
+    version='0.1.1',
     packages=find_packages(),
     license='MIT',
     description='a package to translate data between common coordinate templates',
     long_description=long_description,
     long_description_content_type='text/markdown',
     install_requires=[
         'numpy',
-        'nibabel',
-        'scipy',
-        'networkx',
+        'brainglobe_atlasapi',
         'pandas',
-        'requests'
+        'requests',
+        'pynrrd',
+        'xmltodict',
+        'opencv-python',
+        'scikit-image'
     ]
 )