begin to introduce custom atlas function

Neural-Systems-at-UIO · Aug 21, 2024 · 78ea94a · 78ea94a
1 parent 7ef6f0a
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diff --git a/.gitignore b/.gitignore
@@ -167,3 +167,6 @@ test_data/tTA_2877_NOP_horizontal_final_2017.json
 fileForMessingAround.py
 
 outputs/
+test_data/
+test/
+PyNutil/metadata/annotation_volumes/
diff --git a/PyNutil/main.py b/PyNutil/main.py
@@ -146,6 +146,11 @@ def load_atlas_data(self, atlas_name):
         print("atlas labels loaded ✅")
         return atlas_volume, atlas_labels
 
+    def load_custom_atlas(self, atlas_path, label_path):
+        atlas_volume = read_atlas_volume(atlas_path)
+        atlas_labels = pd.read_csv(label_path)
+        return atlas_volume, atlas_labels
+
     def get_coordinates(
         self, non_linear=True, method="all", object_cutoff=0, use_flat=False
     ):