Skip to content

Commit

Permalink
Update annotation.rst
Browse files Browse the repository at this point in the history
  • Loading branch information
Majpuc authored Jan 4, 2024
1 parent 4466773 commit a5b631d
Showing 1 changed file with 4 additions and 4 deletions.
8 changes: 4 additions & 4 deletions Docs/annotation.rst
Original file line number Diff line number Diff line change
Expand Up @@ -10,7 +10,7 @@ boundaries and annotate points in order to extract coordinates.
Use the webapp here: https://wiki.ebrains.eu/bin/view/Collabs/image-registration-and-analysis-demo

.. image:: vertopal_f685c684f9f741c382a00fa63533872a/media/image4.png
:width: 6.3in
:width: 5.9in
:height: 2.88611in

Dataset DOI: 10.25493/G6CQ-D4D
Expand All @@ -28,7 +28,7 @@ Save your annotations with the "save" or "save as" buttons. The file format is .

**Export to Excel**

The markers will be listed 1,2,3,4, etc.. in the order you place them. In the example below, electrode tracks were mapped. In order to keep track of which marker belong to which electrode, you can asign a different color to each electrode and start placing the markers on your images in a systematic way e.g. (marker 1: yellow; marker 2:green, etc...).
The markers will be listed 1,2,3,4, etc.. in the order you place them. In the example below, electrode tracks were mapped. In order to keep track of which marker belong to which electrode, you can assign a different color to each electrode and start placing the markers on your images in a systematic way e.g. (marker 1: yellow; marker 2:green, etc...).
The coordinates for each markers are found under fx, fy, fz. Those coordinates can be copied and arranged in a notepad file as shown in the figure where you can assign a RGB code to the marker list.
This notepad file can be pasted in MeshView for you to visualise your electrode tracks.

Expand All @@ -44,11 +44,11 @@ The saved .lz file can also be visualised in the 3D viewer, MeshView (https://me
Read more about MeshView here: https://meshview-for-brain-atlases.readthedocs.io/en/latest/

.. image:: vertopal_f685c684f9f741c382a00fa63533872a/media/image10.png
:width: 6.3in
:width: 5.9in
:height: 2.88611in


.. image:: vertopal_f685c684f9f741c382a00fa63533872a/media/image11.png
:width: 6.3in
:width: 5.9in
:height: 2.88611in

0 comments on commit a5b631d

Please sign in to comment.