DZIP with desktop descriptors

QuickNII/VisuAlign JSON can be combined with DZIP pyramids.
Neural-Systems-at-UIO · Mar 27, 2024 · 39ccad3 · 39ccad3
1 parent 80eeda5
commit 39ccad3
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Showing 2 changed files with 35 additions and 5 deletions.
diff --git a/configuration.js b/configuration.js
@@ -16,10 +16,20 @@ async function transformSeries(series) {
             anchoring: section.ouv,
             markers: section.markers
         }));
+        series.dziproot = `https://data-proxy.ebrains.eu/api/v1/buckets/${series.bucket}/.nesysWorkflowFiles/zippedPyramids`;
+    }
+    if(args.dzip) {
+        series.dziproot = args.dzip.match(/(.*zippedPyramids).*/)[1];
+        const prefix = args.dzip.match(/.*zippedPyramids\/(.*)\/.*$/)[1];
+        for(let section of series.slices) {
+            section.filename = prefix + "/" + section.filename.split(".")[0] + ".dzip";
+        }
+    }
+    if(series.dziproot) {
         const dzipmap = new Map;
         loaders.DZILoader = async section_id => {
             if(!dzipmap.has(section_id)) {
-                dzipmap.set(section_id, await netunzip(`https://data-proxy.ebrains.eu/api/v1/buckets/${series.bucket}/.nesysWorkflowFiles/zippedPyramids/${section_id}`));
+                dzipmap.set(section_id, await netunzip(`${series.dziproot}/${section_id}`));
             }
             const zip = dzipmap.get(section_id);
             return new TextDecoder().decode(await zip.get(zip.entries.get(section_id.match(/.*\/(.*)p/)[1])));

diff --git a/index.html b/index.html
@@ -29,7 +29,7 @@
                     setlog(`Can't access JSON descriptor at ${jsonurl}. Please verify that the link is correct and that it's available for cross-site access ("CORS").\n${json.message}`);
                     return;
                 }
-                document.getElementById("pyramids").hidden=!!json.bucket;
+                document.getElementById("pyrs").hidden=!!json.bucket;
                 if(json.bucket) {
                     let slices=json.sections;
                     let length=slices.length;
@@ -49,6 +49,15 @@
                                   `Nonlinear tools: <a target="_blank" href="${nltools}">${nltools}</a>`;
                     return;
                 }
+                if(pyramids.endsWith(".dzip")) {
+                    let baselink=`${location.href.match(/(.*\/)[^/]*/)[1]}filmstripzoom.html?atlas=${atlas.value}&series=${jsonurl}&dzip=${pyramids}`;
+                    let antools=`${baselink}&tools`;
+                    let nltools=`${antools}&nl`;
+                    log.innerHTML=`Viewer: <a target="_blank" href="${baselink}">${baselink}</a><br>`+
+                                  `Annotation tools: <a target="_blank" href="${antools}">${antools}</a><br>`+
+                                  `Nonlinear tools: <a target="_blank" href="${nltools}">${nltools}</a>`;
+                    return;
+                }
                 let slices=json.slices;
                 let length=slices.length;
                 if(!pyramids.length){
@@ -115,9 +124,20 @@
     </head>
     <body>
         LocaliZoom link configurator<br><br>
-        <input type="text" id="json" placeholder="Complete URL for JSON, https://object.cscs.ch/.../xy.json" oninput="check()"><br>
-        <input type="text" id="pyramids" placeholder="Container ID only, like &quot;imgsvc-17b7fa98-a152-995b-86d2-fde75106ce0f&quot;, or a collab-slug prefixed with &quot;buckets/&quot;" oninput="check()"><br>
-        <select id="atlas">
+        Dataset descriptor, complete URL of QuickNII/VisuAlign (.json), WebAlign (.waln), WebWarp (.wwrp), or LocaliZoom (.lz) file:<br>
+        <input type="text" id="json" oninput="check()"><br>
+        <br>
+        <div id="pyrs">
+            Pyramids
+            <ul>
+                <li>CSCS container ID, like &quot;imgsvc-17b7fa98-a152-995b-86d2-fde75106ce0f&quot; (see first example)</li>
+                <li>Collab-slug prefixed with &quot;buckets/&quot; (see second example)</li>
+                <li>Complete link ("API Url") to any .dzip file from the series</li>
+            </ul>
+            <input type="text" id="pyramids" placeholder="Container ID only, like , or a collab-slug prefixed with &quot;buckets/&quot;" oninput="check()"><br>
+        <br>
+        </div>
+        <select id="atlas" oninput="check()">
             <option value="WHS_SD_Rat_v4_39um">WHS SD Rat v4 39um</option>
             <option value="WHS_SD_Rat_v3_39um">WHS SD Rat v3 39um</option>
             <option value="WHS_SD_Rat_v2_39um">WHS SD Rat v2 39um</option>