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Fix the base_dir path to lead to "projects" dir #3

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Oct 14, 2024
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Fix the base_dir path to lead to "projects" dir #3

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4 changes: 3 additions & 1 deletion lib/realms/tenx/utils/sample_file_handler.py
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Original file line number Diff line number Diff line change
Expand Up @@ -41,7 +41,9 @@ def __init__(self, sample: Any) -> None:
self.config: Dict[str, Any] = sample.config

# Define sample folder structure
self.base_dir: Path = Path(self.config["10x_dir"]) / self.project_name
self.base_dir: Path = (
Path(self.config["10x_dir"]) / "projects" / self.project_name
)
self.sample_dir: Path = self.base_dir / self.sample_id
self.fastq_files_dir: Path = self.base_dir / "fastq_files"

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