Merge pull request #3 from glrs/hotfix/update-base-dir-path

Fix the base_dir path to lead to "projects" dir
NationalGenomicsInfrastructure · Oct 14, 2024 · 7a877b3 · 7a877b3
2 parents 68aa774 + a82c849
commit 7a877b3
Showing 1 changed file with 3 additions and 1 deletion.
diff --git a/lib/realms/tenx/utils/sample_file_handler.py b/lib/realms/tenx/utils/sample_file_handler.py
@@ -41,7 +41,9 @@ def __init__(self, sample: Any) -> None:
         self.config: Dict[str, Any] = sample.config
 
         # Define sample folder structure
-        self.base_dir: Path = Path(self.config["10x_dir"]) / self.project_name
+        self.base_dir: Path = (
+            Path(self.config["10x_dir"]) / "projects" / self.project_name
+        )
         self.sample_dir: Path = self.base_dir / self.sample_id
         self.fastq_files_dir: Path = self.base_dir / "fastq_files"