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fix: seek to beginning of config file after looking for verbose key #95

fix: seek to beginning of config file after looking for verbose key

fix: seek to beginning of config file after looking for verbose key #95

# Test ngen-lgar-c integration
name: Ngen Integration Tests
# Controls when the action will run.
on:
push:
branches: [ master, dev, notreal ]
pull_request:
branches: [ master, dev, notreal ]
workflow_dispatch:
env:
# Obtained from https://docs.github.com/en/actions/using-github-hosted-runners/about-github-hosted-runners#supported-runners-and-hardware-resources
# TODO: add something later that can check the runners for hyperthreading
LINUX_NUM_PROC_CORES: 2
MACOS_NUM_PROC_CORES: 3
ASAN_OPTIONS: detect_leaks=false
# A workflow run is made up of one or more jobs that can run sequentially or in parallel
jobs:
# Run general unit tests in linux environment
test_lgar-c:
# The type of runner that the job will run on
strategy:
matrix:
os: [ubuntu-latest, macos-latest]
fail-fast: false
runs-on: ${{ matrix.os }}
# Steps represent a sequence of tasks that will be executed as part of the job
steps:
# Checkout and build the LGAR-C
- name: Checkout the commit
uses: actions/checkout@v4
- name: Build the LGAR-C Library
run: |
cmake -B cmake_build -S . -DNGEN=ON
make -C cmake_build
- name: Save LGAR-C to a Temp Directory
run: |
# Move files to a temporary directory
mkdir ${{runner.temp}}/lgar
mv ./* ${{runner.temp}}/lgar
# Checkout and build the SoilMoistureProfiles
- name: Checkout the commit
uses: actions/checkout@v4
with:
repository: noaa-owp/soilmoistureprofiles
- name: Build the SMP Library
run: |
cmake -B cmake_build -S . -DNGEN=ON
make -C cmake_build
- name: Save SoilMoistureProfile to a Temp Directory
run: |
# Move files to a temporary directory
mkdir ${{runner.temp}}/smp
mv ./* ${{runner.temp}}/smp
# Checkout and build SoilFreezeThaw
- name: checkout actions in another repo
uses: actions/checkout@v4
with:
repository: noaa-owp/soilfreezethaw
- name: Build the SFT Library
run: |
cmake -B cmake_build -S . -DNGEN=ON
make -C cmake_build
- name: Save SoilFreezeThaw to a Temp Directory
run: |
# Move files to a temporary directory
mkdir ${{runner.temp}}/sft
mv ./* ${{runner.temp}}/sft
# Checkout ngen
- name: checkout actions in another repo
uses: actions/checkout@v4
with:
repository: noaa-owp/ngen
- name: Build SLoTH
id: submod_build_6
uses: ./.github/actions/ngen-submod-build
with:
mod-dir: "extern/sloth/"
targets: "slothmodel"
# Build Ngen and save some files
- name: Build Ngen
id: ngen_id1
uses: ./.github/actions/ngen-build
with:
targets: "ngen"
build-cores: ${{ env.LINUX_NUM_PROC_CORES }}
#is this required for this test?
bmi_c: 'ON'
timeout-minutes: 15
- name: Move LGAR-C File Including cmake_build to Appropriate Directory
run: |
if [ -d "./extern/LGAR-C/" ]; then
rm -rf extern/LGAR-C
fi
mkdir -p extern/LGAR-C/LGAR-C
mv ${{runner.temp}}/lgar/* extern/LGAR-C/LGAR-C
- name: Move SFT Files Including cmake_build to Appropriate Directory
run: |
rm -rf extern/SoilFreezeThaw/SoilFreezeThaw/*
mv ${{runner.temp}}/sft/* extern/SoilFreezeThaw/SoilFreezeThaw
- name: Move SMP Files Including cmake_build to Appropriate Directory
run: |
rm -rf extern/SoilMoistureProfiles/SoilMoistureProfiles/*
mv ${{runner.temp}}/smp/* extern/SoilMoistureProfiles/SoilMoistureProfiles
# Run ngen with sft, smp, and lasam
- name: Run Ngen Test with LASAM
run: |
mv ${{ steps.ngen_id1.outputs.build-dir }} ./ngen-build/
cp extern/LGAR-C/LGAR-C/data/vG_default_params.dat data/
inputfile='extern/LGAR-C/LGAR-C/realizations/realization_config_lasam.json'
./ngen-build/ngen ./data/catchment_data.geojson "cat-27" ./data/nexus_data.geojson "nex-26" $inputfile
- name: Run Ngen Test with SFT and SMP
run: |
inputfile='extern/LGAR-C/LGAR-C/realizations/realization_config_lasam_sft.json'
./ngen-build/ngen ./data/catchment_data.geojson "cat-27" ./data/nexus_data.geojson "nex-26" $inputfile
- name: Run Ngen Test with SMP
run: |
inputfile='extern/LGAR-C/LGAR-C/realizations/realization_config_lasam_smp.json'
./ngen-build/ngen ./data/catchment_data.geojson "cat-27" ./data/nexus_data.geojson "nex-26" $inputfile