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Simplify resource-related variables, remove CDUMP where unneeded #2727

Merged
merged 95 commits into from
Jul 30, 2024
Merged

Simplify resource-related variables, remove CDUMP where unneeded #2727

merged 95 commits into from
Jul 30, 2024

Commits on Jun 25, 2024

  1. Simplify resource declarations in config.resources 

    (cherry picked from commit 130e2e4)
    @DavidHuber-NOAA
    DavidHuber-NOAA committed Jun 25, 2024
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  2. Remove 'step' from resource variable names in env files 

    (cherry picked from commit c3276ac)
    @DavidHuber-NOAA
    DavidHuber-NOAA committed Jun 25, 2024
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  3. Trim env files by declaring common variables 

    (cherry picked from commit 325891d)
    @DavidHuber-NOAA
    DavidHuber-NOAA committed Jun 25, 2024
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  4. More env cleanup

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Jun 25, 2024
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  5. Get sfcanl npe based on ntiles

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Jun 25, 2024
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  6. Export standard resource variables only

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Jun 25, 2024
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  7. Clean up machine resource files

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Jun 25, 2024
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  8. Improved variable name

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Jun 25, 2024
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  9. Strip cdump from resource variables in tasks.py

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Jun 25, 2024
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Commits on Jun 26, 2024

  1. Replace references of CDUMP with RUN

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Jun 26, 2024
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  2. Merge remote-tracking branch 'emc/develop' into feature/simplify_res 

    * emc/develop:
  Activate snow DA test on WCOSS (NOAA-EMC#2720)
  Cleanup of stale RUNDIRS from an experiment (NOAA-EMC#2719)
  Update logic for MOM6 number of layers/exception values (NOAA-EMC#2681)
  Update wave jobs to use COMIN/COMOUT (NOAA-EMC#2643)
    @DavidHuber-NOAA
    DavidHuber-NOAA committed Jun 26, 2024
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  3. Add whitespace

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Jun 26, 2024
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Commits on Jun 27, 2024

  1. Add call to update_base

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Jun 27, 2024
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  2. Update wxflow to enable setting envars before sourcing configs

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Jun 27, 2024
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  3. Update wxflow to include new test

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Jun 27, 2024
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  4. Revert wxflow

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Jun 27, 2024
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  5. Create temporary 'config.run's to set RUN at setup time

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Jun 27, 2024
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  6. Replace (()) with {}

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Jun 27, 2024
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  7. Ignore 'misspellings'

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Jun 27, 2024
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  8. Ignore 'unused' variables

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Jun 27, 2024
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  9. Address shellcheck errors

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Jun 27, 2024
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  10. Revert GAEA.env, remove unused APRUN

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Jun 27, 2024
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  11. Merge remote-tracking branch 'emc/develop' into feature/simplify_res 

    * emc/develop:
  updated Finalize in Jenkinsfile and added try block around scm checkout (NOAA-EMC#2692)
    @DavidHuber-NOAA
    DavidHuber-NOAA committed Jun 27, 2024
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Commits on Jun 28, 2024

  1. Update gefs resources to clean resource variables

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Jun 28, 2024
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  2. Redefine npe in analysis jobs

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Jun 28, 2024
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  3. Remove more references to CDUMP

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Jun 28, 2024
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  4. Update wxflow so CDUMP isn't required

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Jun 28, 2024
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  5. Add CDUMP cludge until wxflow is updated

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Jun 28, 2024
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  6. Separate wtimes for eobs and eomg

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    DavidHuber-NOAA committed Jun 28, 2024
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  7. Revert wxflow

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    DavidHuber-NOAA committed Jun 28, 2024
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  8. Check stage RUN instead of CDUMP

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Jun 28, 2024
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  9. Rename update_base to match superclass

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Jun 28, 2024
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  10. Make a copy of appconfig to for each RUN as it is modified

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Jun 28, 2024
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  11. Add envvar notes to create_experiment.py

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Jun 28, 2024
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Commits on Jul 2, 2024

  1. Check that common variables are defined before using them

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Jul 2, 2024
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  2. Switch analcalc CDUMP to RUN

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Jul 2, 2024
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  3. Fix postsndcfp resource declaration

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Jul 2, 2024
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  4. Further simplify analysis resources

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Jul 2, 2024
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  5. Merge remote-tracking branch 'emc/develop' into feature/simplify_res

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Jul 2, 2024
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  6. Ignore 'unused' SC warning

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Jul 2, 2024
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  7. Replace CDUMP with RUN in docs

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Jul 2, 2024
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  8. Remove unused CDUMP references

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Jul 2, 2024
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  9. Revert CDUMP in analysis scripts to strip 'enkf'

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Jul 2, 2024
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  10. Merge remote-tracking branch 'emc/develop' into feature/simplify_res

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Jul 2, 2024
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  11. Export RUN before sourcing configs

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Jul 2, 2024
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  12. Update GEFS resources after last merge

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Jul 2, 2024
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Commits on Jul 3, 2024

  1. Merge remote-tracking branch 'emc/develop' into feature/simplify_res

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Jul 3, 2024
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  2. Merge remote-tracking branch 'emc/develop' into HEAD 

    * emc/develop:
  Update gempak job to run one fcst hour per task (NOAA-EMC#2671)
    @DavidHuber-NOAA
    DavidHuber-NOAA committed Jul 3, 2024
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  3. Merge remote-tracking branch 'emc/develop' into feature/simplify_res 

    * emc/develop:
  Hotfix for undefined CLUSTERS (NOAA-EMC#2748)
    @DavidHuber-NOAA
    DavidHuber-NOAA committed Jul 3, 2024
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  4. Add todo to remove CDUMP from the ocean_analysis_post j-job

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Jul 3, 2024
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  5. Rename CDUMP to rCDUMP for analysis jobs that need exporting

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Jul 3, 2024
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  6. Remove CDUMP from ecf files; do not export CDUMP in J-Jobs

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Jul 3, 2024
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  7. Restore CDUMP to Fit2Obs J-job

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Jul 3, 2024
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  8. Restore CDUMP to Fit2Obs (part 2).

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Jul 3, 2024
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  9. Update parm/config/gfs/config.resources

    @DavidHuber-NOAA
    DavidHuber-NOAA authored Jul 3, 2024
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  10. Update parm/config/gfs/config.resources

    @DavidHuber-NOAA
    DavidHuber-NOAA authored Jul 3, 2024
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  11. Export postsndcfp resource variables

    @DavidHuber-NOAA
    DavidHuber-NOAA authored Jul 3, 2024
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Commits on Jul 5, 2024

  1. Merge remote-tracking branch 'emc/develop' into feature/simplify_res 

    * emc/develop:
  Update ufs model hash to 20240625 (NOAA-EMC#2729)
    @DavidHuber-NOAA
    DavidHuber-NOAA committed Jul 5, 2024
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  2. Remove additional CDUMP references

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Jul 5, 2024
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  3. Rename resource variables 

    npe=>ntasks
npe_node=>tasks_per_node
npe_node_max=>max_tasks_per_node
nth=>threads_per_task
wtime=>walltime
    @DavidHuber-NOAA
    DavidHuber-NOAA committed Jul 5, 2024
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  4. Disambiguate calcanl ntasks

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Jul 5, 2024
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  5. Correct WCOSS2 mpiexec call for fcst/efcs jobs

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Jul 5, 2024
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  6. Remove NTHREADS2

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    DavidHuber-NOAA committed Jul 5, 2024
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Commits on Jul 8, 2024

  1. Rename threads to threads_per_task for a few gefs jobs

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Jul 8, 2024
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  2. Merge remote-tracking branch 'emc/develop' into feature/simplify_res

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Jul 8, 2024
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Commits on Jul 9, 2024

  1. Merge remote-tracking branch 'emc/develop' into feature/simplify_res

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Jul 9, 2024
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Commits on Jul 15, 2024

  1. Merge remote-tracking branch 'emc/develop' into feature/simplify_res 

    * emc/develop:
  CI maintenance updates and adding CI Unit Tests (NOAA-EMC#2740)
  Adds contents of constructor and initialize methods to marine LETKF class (NOAA-EMC#2635)
  Fix GDAS group B restart archiving (NOAA-EMC#2735)
  Add fcst dependency to ocnanalprep (NOAA-EMC#2728)
  Update (partially) global-workflow for orion+rocky9 (NOAA-EMC#2741)
    @DavidHuber-NOAA
    DavidHuber-NOAA committed Jul 15, 2024
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  2. Merge branch 'feature/simplify_res' of github.com:davidhuber-noaa/glo… 

    …bal-workflow into feature/simplify_res

* 'feature/simplify_res' of github.com:davidhuber-noaa/global-workflow:
  Rename threads to threads_per_task for a few gefs jobs
    @DavidHuber-NOAA
    DavidHuber-NOAA committed Jul 15, 2024
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  3. Fix tasks per node variable name

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Jul 15, 2024
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  4. Merge remote-tracking branch 'emc/develop' into feature/simplify_res 

    * emc/develop:
  Updated prepobs and fit2obs versions for Orion Rocky9 (NOAA-EMC#2758)
    @DavidHuber-NOAA
    DavidHuber-NOAA committed Jul 15, 2024
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Commits on Jul 16, 2024

  1. Empty commit to trigger CI unit tests

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    DavidHuber-NOAA committed Jul 16, 2024
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  2. Revert wxflow and applications.py

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Jul 16, 2024
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  3. Check for NoneType after calling which; rename rocotostat to prevent … 

    …nameclash with rocotostat module
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    DavidHuber-NOAA committed Jul 16, 2024
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  4. Update wxflow hash

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Jul 16, 2024
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  5. Merge remote-tracking branch 'emc/develop' into feature/simplify_res

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Jul 16, 2024
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  6. Try unsetting for CI test

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    DavidHuber-NOAA committed Jul 16, 2024
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  7. Revert unset

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    DavidHuber-NOAA committed Jul 16, 2024
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  8. Fix tasks/node variable for WCOSS2 fcst/efcs jobs

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    DavidHuber-NOAA committed Jul 16, 2024
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Commits on Jul 17, 2024

  1. Increase fit2obs memory at high res

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    DavidHuber-NOAA committed Jul 17, 2024
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Commits on Jul 22, 2024

  1. Merge remote-tracking branch 'emc/develop' into feature/simplify_res 

    * emc/develop:
  Set METplus process count in config.metp; add verif-global support for Rocky 9 (NOAA-EMC#2774)
  Hotfix: Update jcb to avoid git-lfs files (NOAA-EMC#2782)
    @DavidHuber-NOAA
    DavidHuber-NOAA committed Jul 22, 2024
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Commits on Jul 23, 2024

  1. Merge remote-tracking branch 'emc/develop' into feature/simplify_res 

    * emc/develop:
  Replace Jinja namespaces with replace_tmpl filter and disable ACCOUNT_SERVICE option (NOAA-EMC#2775)
  Add task to process reforecast variables to save on WCOSS2 (NOAA-EMC#2680)
    @DavidHuber-NOAA
    DavidHuber-NOAA committed Jul 23, 2024
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  2. Remove reference to account_service

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Jul 23, 2024
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Commits on Jul 25, 2024

  1. Remove unused ppn and nprocs from env files

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    DavidHuber-NOAA committed Jul 25, 2024
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  2. Require config.resources to be sourced for each job

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Jul 25, 2024
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  3. Replace CDUMP with RUN_local/RUN

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Jul 25, 2024
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  4. Remove 'gefs' from default _RUN_LIST

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Jul 25, 2024
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  5. Apply suggestions from code review 

    Co-authored-by: Walter Kolczynski - NOAA <[email protected]>
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    DavidHuber-NOAA and WalterKolczynski-NOAA authored Jul 25, 2024
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  6. Remove unneeded _RUN_LIST

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    DavidHuber-NOAA committed Jul 25, 2024
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  7. Merge branch 'feature/simplify_res' of github.com:DavidHuber-NOAA/glo… 

    …bal-workflow into feature/simplify_res
    @DavidHuber-NOAA
    DavidHuber-NOAA committed Jul 25, 2024
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  8. Sync with develop and resolve conflicts

    @DavidHuber-NOAA
    DavidHuber-NOAA committed Jul 25, 2024
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  9. Remove local declaration

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    DavidHuber-NOAA committed Jul 25, 2024
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  10. Merge remote-tracking branch 'emc/develop' into feature/simplify_res

    @DavidHuber-NOAA
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Commits on Jul 29, 2024

  1. Merge branch 'feature/simplify_res' of github.com:davidhuber-noaa/glo… 

    …bal-workflow into feature/simplify_res

* 'feature/simplify_res' of github.com:davidhuber-noaa/global-workflow:
  Temporarily disable METplus jobs (NOAA-EMC#2796)
  Remove local declaration
  Remove unneeded _RUN_LIST
  Apply suggestions from code review
  Remove 'gefs' from default _RUN_LIST
  Replace CDUMP with RUN_local/RUN
  Require config.resources to be sourced for each job
  Remove unused ppn and nprocs from env files
  Refactoring of the marine B-matrix job (NOAA-EMC#2749)
    @DavidHuber-NOAA
    DavidHuber-NOAA committed Jul 29, 2024
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  2. Merge remote-tracking branch 'emc/develop' into feature/simplify_res 

    * emc/develop:
  HR4 GWD update (NOAA-EMC#2732)
    @DavidHuber-NOAA
    DavidHuber-NOAA committed Jul 29, 2024
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Commits on Jul 30, 2024

  1. Merge remote-tracking branch 'emc/develop' into feature/simplify_res 

    * emc/develop:
  Remove f000 from atmos rocoto tasks for replay cases (NOAA-EMC#2778)
    @DavidHuber-NOAA
    DavidHuber-NOAA committed Jul 30, 2024
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