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Remove all references to CDUMP #1209

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DavidHuber-NOAA
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CDUMP is being removed from the global workflow in favor of RUN. This PR removes CDUMP from the GDASApp.

Partly resolves NOAA-EMC/global-workflow#1299 prerequisite for PR NOAA-EMC/global-workflow#2727

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Only use CDUMP where appropriate
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