Merge pull request #186 from NCI-GDC/feat/DEV-1900-add-wgs_coverage-m…

…appings DEV-1900: add wgs_coverage mappings
NCI-GDC · Jun 28, 2023 · 00cd20f · 00cd20f
2 parents 688084b + 282e06b
commit 00cd20f
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Showing 4 changed files with 32 additions and 6 deletions.
diff --git a/Jenkinsfile b/Jenkinsfile
diff --git a/es-models/case_centric/case_centric.mapping.yaml b/es-models/case_centric/case_centric.mapping.yaml
@@ -803,6 +803,8 @@ properties:
                 type: double
               updated_datetime:
                 type: keyword
+              wgs_coverage:
+                type: keyword
             type: nested
           metadata:
             properties:
@@ -1154,6 +1156,8 @@ properties:
                 type: double
               updated_datetime:
                 type: keyword
+              wgs_coverage:
+                type: keyword
             type: nested
           state:
             type: keyword
@@ -1280,6 +1284,8 @@ properties:
             type: double
           updated_datetime:
             type: keyword
+          wgs_coverage:
+            type: keyword
         type: nested
       magnification:
         type: double
@@ -1374,6 +1380,8 @@ properties:
         type: keyword
       updated_datetime:
         type: keyword
+      wgs_coverage:
+        type: keyword
     type: nested
   follow_ups:
     properties:

diff --git a/es-models/gdc_from_graph/case.mapping.yaml b/es-models/gdc_from_graph/case.mapping.yaml
@@ -1028,6 +1028,9 @@ properties:
               updated_datetime:
                 normalizer: clinical_normalizer
                 type: keyword
+              wgs_coverage:
+                normalizer: clinical_normalizer
+                type: keyword
             type: nested
           metadata:
             properties:
@@ -1492,6 +1495,9 @@ properties:
               updated_datetime:
                 normalizer: clinical_normalizer
                 type: keyword
+              wgs_coverage:
+                normalizer: clinical_normalizer
+                type: keyword
             type: nested
           state:
             normalizer: clinical_normalizer
@@ -1650,6 +1656,9 @@ properties:
           updated_datetime:
             normalizer: clinical_normalizer
             type: keyword
+          wgs_coverage:
+            normalizer: clinical_normalizer
+            type: keyword
         type: nested
       magnification:
         type: double
@@ -1769,6 +1778,9 @@ properties:
       updated_datetime:
         normalizer: clinical_normalizer
         type: keyword
+      wgs_coverage:
+        normalizer: clinical_normalizer
+        type: keyword
     type: nested
   follow_ups:
     properties:

diff --git a/es-models/gdc_from_graph/file.mapping.yaml b/es-models/gdc_from_graph/file.mapping.yaml
@@ -134,6 +134,9 @@ properties:
           updated_datetime:
             normalizer: clinical_normalizer
             type: keyword
+          wgs_coverage:
+            normalizer: clinical_normalizer
+            type: keyword
         type: nested
       metadata:
         properties:
@@ -2562,6 +2565,9 @@ properties:
           updated_datetime:
             normalizer: clinical_normalizer
             type: keyword
+          wgs_coverage:
+            normalizer: clinical_normalizer
+            type: keyword
         type: nested
       state:
         normalizer: clinical_normalizer
@@ -2741,6 +2747,9 @@ properties:
       updated_datetime:
         normalizer: clinical_normalizer
         type: keyword
+      wgs_coverage:
+        normalizer: clinical_normalizer
+        type: keyword
     type: nested
   magnification:
     type: double
@@ -2864,3 +2873,6 @@ properties:
   updated_datetime:
     normalizer: clinical_normalizer
     type: keyword
+  wgs_coverage:
+    normalizer: clinical_normalizer
+    type: keyword