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Bug fix for python 3.11 and over #1122

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Bug fix for python 3.11 and over #1122

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cfbad45
Make suiet2p compatible with py3.12
calebshibu May 17, 2024
aec4384
Make it backward compatible??
calebshibu May 17, 2024
3e936d3
Fix for py3.11
calebshibu May 17, 2024
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13 changes: 9 additions & 4 deletions suite2p/detection/stats.py
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Original file line number Diff line number Diff line change
Expand Up @@ -7,6 +7,7 @@
from dataclasses import dataclass, field
from warnings import warn

import sys
import numpy as np
from numpy.linalg import norm
from scipy.spatial import ConvexHull
Expand All @@ -26,7 +27,6 @@ def median_pix(ypix, xpix):
ymed = ypix[imin]
return [ymed, xmed]


class EllipseData(NamedTuple):
mu: float
cov: float
Expand All @@ -47,17 +47,22 @@ def radius(self) -> float:
def aspect_ratio(self) -> float:
ry, rx = self.radii
return aspect_ratio(width=ry, height=rx)


def default_rsort():
return np.sort(distance_kernel(radius=30).flatten())

@dataclass(frozen=True)
class ROI:
# To avoid the ValueError caused by using a mutable default value in your dataclass, you should use the default_factory argument of the field function.
ypix: np.ndarray
xpix: np.ndarray
lam: np.ndarray
med: np.ndarray
do_crop: bool
rsort: np.ndarray = field(default=np.sort(distance_kernel(radius=30).flatten()),
repr=False)
if sys.version_info >= (3, 11):
rsort: np.ndarray = field(default_factory=default_rsort, repr=False)
else:
rsort: np.ndarray = field(default=np.sort(distance_kernel(radius=30).flatten()), repr=False)

def __post_init__(self):
"""Validate inputs."""
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