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Update README.md
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carsen-stringer authored Aug 29, 2023
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![tests](https://github.com/mouseland/cellpose/actions/workflows/test_and_deploy.yml/badge.svg)
[![codecov](https://codecov.io/gh/MouseLand/suite2p/branch/main/graph/badge.svg?token=OJEC3mty85)](https://codecov.io/gh/MouseLand/suite2p)
[![PyPI version](https://badge.fury.io/py/suite2p.svg)](https://badge.fury.io/py/suite2p)
[![Downloads](https://pepy.tech/badge/suite2p)](https://pepy.tech/project/suite2p)
[![Downloads](https://pepy.tech/badge/suite2p/month)](https://pepy.tech/project/suite2p)
[![Downloads](https://static.pepy.tech/badge/suite2p)](https://pepy.tech/project/suite2p)
[![Downloads](https://static.pepy.tech/badge/suite2p/month)](https://pepy.tech/project/suite2p)
[![Python version](https://img.shields.io/pypi/pyversions/suite2p)](https://pypistats.org/packages/suite2p)
[![Licence: GPL v3](https://img.shields.io/github/license/MouseLand/suite2p)](https://github.com/MouseLand/suite2p/blob/main/LICENSE)
[![Contributors](https://img.shields.io/github/contributors-anon/MouseLand/suite2p)](https://github.com/MouseLand/suite2p/graphs/contributors)
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For support, please open an [issue](https://github.com/MouseLand/suite2p/issues).
The reference paper is [here](https://www.biorxiv.org/content/early/2017/07/20/061507). The deconvolution algorithm is based on [this paper](https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1005423), with settings based on [this paper](http://www.jneurosci.org/content/early/2018/08/06/JNEUROSCI.3339-17.2018).

You can now run suite2p in google colab, no need to locally install (although we recommend doing so eventually): [![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/MouseLand/suite2p/blob/main/jupyter/run_suite2p_colab_2021.ipynb). Note you do not have access to the GUI via google colab, but you can download the processed files and view them locally in the GUI.
You can now run suite2p in google colab, no need to locally install (although we recommend doing so eventually): [![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/MouseLand/suite2p/blob/main/jupyter/run_suite2p_colab_2023.ipynb). Note you do not have access to the GUI via google colab, but you can download the processed files and view them locally in the GUI.

See this **twitter [thread](https://twitter.com/marius10p/status/1032804776633880583)** for GUI demonstrations.

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