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bug in gui import and adding fontsize
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carsen-stringer committed Feb 14, 2024
1 parent f7c4e88 commit c7bc445
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4 changes: 2 additions & 2 deletions README.md
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Expand Up @@ -31,7 +31,7 @@ Stringer, C., Wang, T., Michaelos, M., & Pachitariu, M. (2021). Cellpose: a gene
**If you use the new human-in-the-loop training, please also cite the Cellpose 2.0 [paper](https://www.nature.com/articles/s41592-022-01663-4):**
Pachitariu, M. & Stringer, C. (2022). Cellpose 2.0: how to train your own model. <em>Nature methods</em>, 1-8.

**If you use the restoration models, please also cite the Cellpose3 [paper]():**
**If you use the restoration models, please also cite the Cellpose3 [paper](https://www.biorxiv.org/content/10.1101/2024.02.10.579780v1):**
Stringer, C. & Pachitariu, M. (2024). Cellpose3: one-click image restoration for improved segmentation. <em>bioRxiv</em>.

:triangular_flag_on_post: All models in Cellpose, except `yeast_BF_cp3`, `yeast_PhC_cp3`, and `deepbacs_cp3`, are trained on some amount of data that is **CC-BY-NC**. The Cellpose annotated dataset is also CC-BY-NC.
Expand All @@ -40,7 +40,7 @@ Stringer, C. & Pachitariu, M. (2024). Cellpose3: one-click image restoration for

Cellpose3 enables image restoration in the GUI and the API (CLI support and example notebooks coming soon!) To learn more...
* Check out the paper [thread]().
* Check out the [paper]().
* Check out the [paper](https://www.biorxiv.org/content/10.1101/2024.02.10.579780v1).

Try out the new `cyto3` super-generalist Cellpose model with `model_type="cyto3"`. There are some Cellpose API changes from v2.0 which will be documented soon.

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2 changes: 1 addition & 1 deletion cellpose/__main__.py
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Expand Up @@ -4,7 +4,7 @@

import sys, os, glob, pathlib, time
import numpy as np
from cellpose.gui import gui_old
from cellpose.gui import gui
from natsort import natsorted
from tqdm import tqdm
from cellpose import utils, models, io, version_str, train
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3 changes: 2 additions & 1 deletion cellpose/gui/gui.py
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Expand Up @@ -489,6 +489,7 @@ def make_buttons(self):
b0+=1
self.segaBox = QCollapsible("additional settings")
self.segaBox.setFont(self.medfont)
self.segaBox._toggle_btn.setFont(self.medfont)
self.segaBoxG = QGridLayout()
_content = QWidget()
_content.setLayout(self.segaBoxG)
Expand Down Expand Up @@ -675,7 +676,7 @@ def make_buttons(self):
b0+=1
# FILTERING
self.filtBox = QCollapsible("custom filter settings")
self.filtBox.setFont(self.medfont)
self.filtBox._toggle_btn.setFont(self.medfont)
self.filtBoxG = QGridLayout()
_content = QWidget()
_content.setLayout(self.filtBoxG)
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