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duckdb demo build

duckdb demo build #59

Workflow file for this run

name: duckdb demo build
on:
pull_request_review:
types: [submitted]
jobs:
mimic-iv-duckdb:
# only run if PR is approved
if: github.event.review.state == 'approved'
runs-on: ubuntu-20.04
steps:
- name: Check out repository code
uses: actions/checkout@v3
- name: Download duckdb CLI
run: |
wget https://github.com/duckdb/duckdb/releases/download/v0.6.1/duckdb_cli-linux-amd64.zip
unzip duckdb_cli-linux-amd64.zip
echo "$HOME/.local/bin" >> $GITHUB_PATH
mkdir -p "$HOME/.local/bin"
mv duckdb "$HOME/.local/bin/duckdb"
- name: Download demo data
uses: ./.github/actions/download-demo
- name: Load icu/hosp data into duckdb
run: |
echo "Running duckdb build."
cd ${BUILDCODE_PATH}
./import_duckdb.sh ./
echo `md5sum mimic4.db`
env:
BUILDCODE_PATH: mimic-iv/buildmimic/duckdb