v1.0.0

Changes in version 1.0.0

• Kinship2 is renamed to Pedixplorer and hosted on Bioconductor.
• Pedigree is now a S4 object, all functions are updated to work with
  the new class
• Pedigree constructor now takes a data.frame as input for the Pedigree
  informations and for the special relationship.
  The two data.fram are normalized before being used.
• plot.pedigree support ggplot generation, mark and label can be added
  to the plot.
  The plot is now generated in two steps ped_to_plotdf() and plot_fromdf().
  This allows the user to modify the plot before it is generated.
• All documentation are now generated with Roxygen
• New function available: generate_aff_inds, generate_colors,
  is_informative, min_dist_inf, normData, num_child, useful_inds
• All functions renamed to follow the snake_case convention
• All parameters renamed to follow the snake_case convention
• All test now use testthat files
• Vignettes have been updated to reflect the new changes

v1.1.5

• Change code of ped_to_legdf
• When plotting with the main plot, the legend gets its own
  space separate from the plot. This allow better control over
  the size and localisation of the legend.
• The graphical parameters are reset after each use of plot_fromdf
• Add tooltips control in Pedigree plots and add it to the app
• Add example of interactivness in vignette
• Fix plot area function and legend creation for better alignment

v1.1.4

Changes in version 1.1.4

• Update website and logo
• Improve ped_shiny() esthetics
• Change plot element order rendering for better looks
• Add more control to line width of box and lines
• Improve legend ordering
• Separate website building workflow from check
• Update function documentation and set to internal all unnecessary
  functions for users
• Stabilize unit test
• Standardize the vignettes and add more documentation
• Fix label adjusting position in plot functions

v1.1.2

Changes in version 1.1.2

• Use R version 4.4 and update workflows

v1.1.1

Changes in version 1.1.1

• A shiny application is now available through the ped_shiny() function.
• Function imports have been cleaned.
• Unit tests have been added as well as more snapshot to increase package coverage.
• relped dataset allows to easily test special relationship.
• Documentation is enhanced and correctly linted.
• precision parameter has been added to align4() and set_plot_area() to reduce noise between platform.
• fix_parents() has been fixed and improved.
• More controls over color setting with generate_colors().
• Possibility to force computation of alignement when it fails with force = TRUE.
• upd_famid_id() to upd_famid().
• Zooming in a pedigree object is now done by subsetting the dataframe computed by ped_to_plotdf().
• useful_inds() function has been improved.