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v1.0.7
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@raufs raufs released this 12 Aug 19:26
· 42 commits to main since this release
v1.0.7
1acec33

General workflow changes:

  • Split lsaBGC-Reconcile and lsaBGC-Sociate into separate steps.
  • Introduced running of cgc in step 7 when zol is run - related to Issue/Request #8
  • New options for downstream running of lsaBGC-Sociate and lsaBGC-Reconcile
  • Timeout introduced for creating protein alignments with MUSCLE in lsaBGC-Reconcile and lsaBGC-Sociate. Previously this can lead to abnormally large orthogroups just straggling the pipeline/workflow. Default timeout now set to 30 minutes.
  • Corrected bug introduced in lsaBGC-Reconcile in v1.0.6 - as mentioned in Issue: #5

Updates to lsaBGC-Sociate

  • Corrected issue related to blank "notes" fields in pyseer - related to Issue/Request #6
  • KEY: More conservative filtering of lsaBGC-Sociate results to disregard hits with something in the "notes" field - e.g. if firth regression used in place of lmm.
  • New phylo-heatmap showing associated features with focal GCFs alongside the species tree lsaBGC-Sociate: related to Issue/Request #7

Full Changelog: v1.0.6...v1.0.7

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