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Ability to deal with matrix input #47

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merged 9 commits into from
Sep 5, 2023
Merged

Ability to deal with matrix input #47

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91d781a
TaylorDiff deals with matrix
mBarreau Aug 23, 2023
6154c9c
Add tests to matrix differentiation
mBarreau Aug 27, 2023
82df7b4
Fix test
mBarreau Aug 27, 2023
88d37d5
Fix broken test + formatting
mBarreau Aug 28, 2023
70822df
Fix broken tests
mBarreau Aug 28, 2023
5070019
Clean types in derivative.jl
mBarreau Aug 28, 2023
fbc1de1
Add a warning and increase test coverage
mBarreau Aug 29, 2023
d8a164a
Formatting + fix in test
mBarreau Aug 29, 2023
6ad719f
clean up matrix APIs
tansongchen Sep 2, 2023
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1 change: 1 addition & 0 deletions Project.toml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -8,6 +8,7 @@ ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2"
ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4"
ChainRulesOverloadGeneration = "f51149dc-2911-5acf-81fc-2076a2a81d4f"
SpecialFunctions = "276daf66-3868-5448-9aa4-cd146d93841b"
SliceMap = "82cb661a-3f19-5665-9e27-df437c7e54c8"
SymbolicUtils = "d1185830-fcd6-423d-90d6-eec64667417b"
Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f"

Expand Down
161 changes: 129 additions & 32 deletions benchmark/Manifest.toml
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Open in desktop
Original file line number Diff line number Diff line change
@@ -1,8 +1,8 @@
# This file is machine-generated - editing it directly is not advised

julia_version = "1.9.2"
julia_version = "1.9.3"
manifest_format = "2.0"
project_hash = "33634fd84c64daf14892640fe7fd6289d8fcdf5f"
project_hash = "b3e5f4cf27d760c93b2634d045748b8e8637f186"

[[deps.ADTypes]]
git-tree-sha1 = "a4c8e0f8c09d4aa708289c1a5fc23e2d1970017a"
Expand Down Expand Up @@ -75,6 +75,12 @@ git-tree-sha1 = "c06a868224ecba914baa6942988e2f2aade419be"
uuid = "a9b6321e-bd34-4604-b9c9-b65b8de01458"
version = "0.1.0"

[[deps.BFloat16s]]
deps = ["LinearAlgebra", "Printf", "Random", "Test"]
git-tree-sha1 = "dbf84058d0a8cbbadee18d25cf606934b22d7c66"
uuid = "ab4f0b2a-ad5b-11e8-123f-65d77653426b"
version = "0.4.2"

[[deps.BangBang]]
deps = ["Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires", "Setfield", "Tables"]
git-tree-sha1 = "e28912ce94077686443433c2800104b061a827ed"
Expand Down Expand Up @@ -124,6 +130,36 @@ git-tree-sha1 = "eb4cb44a499229b3b8426dcfb5dd85333951ff90"
uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82"
version = "0.4.2"

[[deps.CUDA]]
deps = ["AbstractFFTs", "Adapt", "BFloat16s", "CEnum", "CUDA_Driver_jll", "CUDA_Runtime_Discovery", "CUDA_Runtime_jll", "ExprTools", "GPUArrays", "GPUCompiler", "KernelAbstractions", "LLVM", "LazyArtifacts", "Libdl", "LinearAlgebra", "Logging", "Preferences", "Printf", "Random", "Random123", "RandomNumbers", "Reexport", "Requires", "SparseArrays", "SpecialFunctions", "UnsafeAtomicsLLVM"]
git-tree-sha1 = "968c1365e2992824c3e7a794e30907483f8469a9"
uuid = "052768ef-5323-5732-b1bb-66c8b64840ba"
version = "4.4.1"

[[deps.CUDA_Driver_jll]]
deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"]
git-tree-sha1 = "498f45593f6ddc0adff64a9310bb6710e851781b"
uuid = "4ee394cb-3365-5eb0-8335-949819d2adfc"
version = "0.5.0+1"

[[deps.CUDA_Runtime_Discovery]]
deps = ["Libdl"]
git-tree-sha1 = "bcc4a23cbbd99c8535a5318455dcf0f2546ec536"
uuid = "1af6417a-86b4-443c-805f-a4643ffb695f"
version = "0.2.2"

[[deps.CUDA_Runtime_jll]]
deps = ["Artifacts", "CUDA_Driver_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"]
git-tree-sha1 = "5248d9c45712e51e27ba9b30eebec65658c6ce29"
uuid = "76a88914-d11a-5bdc-97e0-2f5a05c973a2"
version = "0.6.0+0"

[[deps.CUDNN_jll]]
deps = ["Artifacts", "CUDA_Runtime_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"]
git-tree-sha1 = "75923dce4275ead3799b238e10178a68c07dbd3b"
uuid = "62b44479-cb7b-5706-934f-f13b2eb2e645"
version = "8.9.4+0"

[[deps.ChainRules]]
deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "Statistics", "StructArrays"]
git-tree-sha1 = "f98ae934cd677d51d2941088849f0bf2f59e6f6e"
Expand All @@ -142,6 +178,16 @@ git-tree-sha1 = "3ea2d5853a4d132aedd294047bab373333e92027"
uuid = "f51149dc-2911-5acf-81fc-2076a2a81d4f"
version = "0.1.4"

[[deps.ChangesOfVariables]]
deps = ["LinearAlgebra", "Test"]
git-tree-sha1 = "2fba81a302a7be671aefe194f0525ef231104e7f"
uuid = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0"
version = "0.1.8"
weakdeps = ["InverseFunctions"]

[deps.ChangesOfVariables.extensions]
ChangesOfVariablesInverseFunctionsExt = "InverseFunctions"

[[deps.CodecZlib]]
deps = ["TranscodingStreams", "Zlib_jll"]
git-tree-sha1 = "02aa26a4cf76381be7f66e020a3eddeb27b0a092"
Expand Down Expand Up @@ -178,13 +224,11 @@ version = "1.0.5+0"
git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad"
uuid = "a33af91c-f02d-484b-be07-31d278c5ca2b"
version = "0.1.2"
weakdeps = ["InverseFunctions"]

[deps.CompositionsBase.extensions]
CompositionsBaseInverseFunctionsExt = "InverseFunctions"

[deps.CompositionsBase.weakdeps]
InverseFunctions = "3587e190-3f89-42d0-90ee-14403ec27112"

[[deps.ConcreteStructs]]
git-tree-sha1 = "f749037478283d372048690eb3b5f92a79432b34"
uuid = "2569d6c7-a4a2-43d3-a901-331e8e4be471"
Expand Down Expand Up @@ -318,22 +362,18 @@ weakdeps = ["SparseArrays", "Statistics"]
FillArraysStatisticsExt = "Statistics"

[[deps.Flux]]
deps = ["Adapt", "ChainRulesCore", "Functors", "LinearAlgebra", "MLUtils", "MacroTools", "NNlib", "OneHotArrays", "Optimisers", "Preferences", "ProgressLogging", "Random", "Reexport", "SparseArrays", "SpecialFunctions", "Statistics", "Zygote"]
git-tree-sha1 = "723a8ec75b26fe278256c89c363e370ba733c12e"
deps = ["Adapt", "CUDA", "ChainRulesCore", "Functors", "LinearAlgebra", "MLUtils", "MacroTools", "NNlib", "NNlibCUDA", "OneHotArrays", "Optimisers", "Preferences", "ProgressLogging", "Random", "Reexport", "SparseArrays", "SpecialFunctions", "Statistics", "Zygote", "cuDNN"]
git-tree-sha1 = "3e2c3704c2173ab4b1935362384ca878b53d4c34"
uuid = "587475ba-b771-5e3f-ad9e-33799f191a9c"
version = "0.14.4"
version = "0.13.17"

[deps.Flux.extensions]
FluxAMDGPUExt = "AMDGPU"
FluxCUDAExt = "CUDA"
FluxCUDAcuDNNExt = ["CUDA", "cuDNN"]
AMDGPUExt = "AMDGPU"
FluxMetalExt = "Metal"

[deps.Flux.weakdeps]
AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e"
CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba"
Metal = "dde4c033-4e86-420c-a63e-0dd931031962"
cuDNN = "02a925ec-e4fe-4b08-9a7e-0d78e3d38ccd"

[[deps.ForwardDiff]]
deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"]
Expand Down Expand Up @@ -372,6 +412,12 @@ git-tree-sha1 = "2d6ca471a6c7b536127afccfa7564b5b39227fe0"
uuid = "46192b85-c4d5-4398-a991-12ede77f4527"
version = "0.1.5"

[[deps.GPUCompiler]]
deps = ["ExprTools", "InteractiveUtils", "LLVM", "Libdl", "Logging", "Scratch", "TimerOutputs", "UUIDs"]
git-tree-sha1 = "72b2e3c2ba583d1a7aa35129e56cf92e07c083e3"
uuid = "61eb1bfa-7361-4325-ad38-22787b887f55"
version = "0.21.4"

[[deps.HTTP]]
deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"]
git-tree-sha1 = "cb56ccdd481c0dd7f975ad2b3b62d9eda088f7e2"
Expand All @@ -398,6 +444,12 @@ version = "0.3.1"
deps = ["Markdown"]
uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240"

[[deps.InverseFunctions]]
deps = ["Test"]
git-tree-sha1 = "68772f49f54b479fa88ace904f6127f0a3bb2e46"
uuid = "3587e190-3f89-42d0-90ee-14403ec27112"
version = "0.1.12"

[[deps.IrrationalConstants]]
git-tree-sha1 = "630b497eafcc20001bba38a4651b327dcfc491d2"
uuid = "92d709cd-6900-40b7-9082-c6be49f344b6"
Expand Down Expand Up @@ -426,6 +478,11 @@ git-tree-sha1 = "49fb3cb53362ddadb4415e9b73926d6b40709e70"
uuid = "b14d175d-62b4-44ba-8fb7-3064adc8c3ec"
version = "0.2.4"

[[deps.JuliennedArrays]]
git-tree-sha1 = "4aeebbfcf0615641ec4b0782b73b638eeeabd62e"
uuid = "5cadff95-7770-533d-a838-a1bf817ee6e0"
version = "0.3.0"

[[deps.KernelAbstractions]]
deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"]
git-tree-sha1 = "4c5875e4c228247e1c2b087669846941fb6e0118"
Expand Down Expand Up @@ -497,31 +554,27 @@ deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"]
git-tree-sha1 = "7d6dd4e9212aebaeed356de34ccf262a3cd415aa"
uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688"
version = "0.3.26"
weakdeps = ["ChainRulesCore", "ChangesOfVariables", "InverseFunctions"]

[deps.LogExpFunctions.extensions]
LogExpFunctionsChainRulesCoreExt = "ChainRulesCore"
LogExpFunctionsChangesOfVariablesExt = "ChangesOfVariables"
LogExpFunctionsInverseFunctionsExt = "InverseFunctions"

[deps.LogExpFunctions.weakdeps]
ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4"
ChangesOfVariables = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0"
InverseFunctions = "3587e190-3f89-42d0-90ee-14403ec27112"

[[deps.Logging]]
uuid = "56ddb016-857b-54e1-b83d-db4d58db5568"

[[deps.LoggingExtras]]
deps = ["Dates", "Logging"]
git-tree-sha1 = "a03c77519ab45eb9a34d3cfe2ca223d79c064323"
git-tree-sha1 = "0d097476b6c381ab7906460ef1ef1638fbce1d91"
uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36"
version = "1.0.1"
version = "1.0.2"

[[deps.Lux]]
deps = ["ADTypes", "Adapt", "ChainRulesCore", "ConcreteStructs", "Functors", "LinearAlgebra", "LuxCore", "LuxDeviceUtils", "LuxLib", "Markdown", "Optimisers", "PackageExtensionCompat", "Random", "Reexport", "Setfield", "SparseArrays", "Statistics", "TruncatedStacktraces", "WeightInitializers"]
git-tree-sha1 = "2d9956ba484e78c6285f8ffb30d02fc2e7addd36"
git-tree-sha1 = "78fecc38a73321df15161a481864fce75b66ae84"
uuid = "b2108857-7c20-44ae-9111-449ecde12c47"
version = "0.5.3"
version = "0.5.4"

[deps.Lux.extensions]
LuxComponentArraysExt = "ComponentArrays"
Expand Down Expand Up @@ -656,19 +709,21 @@ version = "1.3.1"

[[deps.NNlib]]
deps = ["Adapt", "Atomix", "ChainRulesCore", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"]
git-tree-sha1 = "3d42748c725c3f088bcda47fa2aca89e74d59d22"
git-tree-sha1 = "72240e3f5ca031937bd536182cb2c031da5f46dd"
uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd"
version = "0.9.4"
version = "0.8.21"

[deps.NNlib.extensions]
NNlibAMDGPUExt = "AMDGPU"
NNlibCUDACUDNNExt = ["CUDA", "cuDNN"]
NNlibCUDAExt = "CUDA"

[deps.NNlib.weakdeps]
AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e"
CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba"
cuDNN = "02a925ec-e4fe-4b08-9a7e-0d78e3d38ccd"

[[deps.NNlibCUDA]]
deps = ["Adapt", "CUDA", "LinearAlgebra", "NNlib", "Random", "Statistics", "cuDNN"]
git-tree-sha1 = "f94a9684394ff0d325cc12b06da7032d8be01aaf"
uuid = "a00861dc-f156-4864-bf3c-e6376f28a68d"
version = "0.2.7"

[[deps.NaNMath]]
deps = ["OpenLibm_jll"]
Expand Down Expand Up @@ -722,9 +777,9 @@ version = "0.5.5+0"

[[deps.Optimisers]]
deps = ["ChainRulesCore", "Functors", "LinearAlgebra", "Random", "Statistics"]
git-tree-sha1 = "af65afa916284e6c7e89f0ab974500cc9235618e"
git-tree-sha1 = "c1fc26bab5df929a5172f296f25d7d08688fd25b"
uuid = "3bd65402-5787-11e9-1adc-39752487f4e2"
version = "0.3.0"
version = "0.2.20"

[[deps.OrderedCollections]]
git-tree-sha1 = "2e73fe17cac3c62ad1aebe70d44c963c3cfdc3e3"
Expand Down Expand Up @@ -808,6 +863,18 @@ uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb"
deps = ["SHA", "Serialization"]
uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c"

[[deps.Random123]]
deps = ["Random", "RandomNumbers"]
git-tree-sha1 = "552f30e847641591ba3f39fd1bed559b9deb0ef3"
uuid = "74087812-796a-5b5d-8853-05524746bad3"
version = "1.6.1"

[[deps.RandomNumbers]]
deps = ["Random", "Requires"]
git-tree-sha1 = "043da614cc7e95c703498a491e2c21f58a2b8111"
uuid = "e6cf234a-135c-5ec9-84dd-332b85af5143"
version = "1.5.3"

[[deps.RealDot]]
deps = ["LinearAlgebra"]
git-tree-sha1 = "9f0a1b71baaf7650f4fa8a1d168c7fb6ee41f0c9"
Expand Down Expand Up @@ -857,6 +924,12 @@ version = "1.15.1"
uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce"
version = "0.7.0"

[[deps.Scratch]]
deps = ["Dates"]
git-tree-sha1 = "30449ee12237627992a99d5e30ae63e4d78cd24a"
uuid = "6c6a2e73-6563-6170-7368-637461726353"
version = "1.2.0"

[[deps.Serialization]]
uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b"

Expand All @@ -882,6 +955,12 @@ git-tree-sha1 = "5d7e3f4e11935503d3ecaf7186eac40602e7d231"
uuid = "699a6c99-e7fa-54fc-8d76-47d257e15c1d"
version = "0.9.4"

[[deps.SliceMap]]
deps = ["ForwardDiff", "JuliennedArrays", "StaticArrays", "Tracker", "ZygoteRules"]
git-tree-sha1 = "f988004407ccf6c398a87914eafdd8bc9109e533"
uuid = "82cb661a-3f19-5665-9e27-df437c7e54c8"
version = "0.2.7"

[[deps.Sockets]]
uuid = "6462fe0b-24de-5631-8697-dd941f90decc"

Expand Down Expand Up @@ -993,8 +1072,8 @@ uuid = "a4e569a6-e804-4fa4-b0f3-eef7a1d5b13e"
version = "1.10.0"

[[deps.TaylorDiff]]
deps = ["ChainRules", "ChainRulesCore", "ChainRulesOverloadGeneration", "SpecialFunctions", "SymbolicUtils", "Zygote"]
path = ".."
deps = ["ChainRules", "ChainRulesCore", "ChainRulesOverloadGeneration", "SymbolicUtils", "Zygote"]
git-tree-sha1 = "5d7a5fa2e46e068ef8b591c3fcf147a927601181"
uuid = "b36ab563-344f-407b-a36a-4f200bebf99c"
version = "0.2.1"

Expand Down Expand Up @@ -1026,6 +1105,18 @@ git-tree-sha1 = "f548a9e9c490030e545f72074a41edfd0e5bcdd7"
uuid = "a759f4b9-e2f1-59dc-863e-4aeb61b1ea8f"
version = "0.5.23"

[[deps.Tracker]]
deps = ["Adapt", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"]
git-tree-sha1 = "92364c27aa35c0ee36e6e010b704adaade6c409c"
uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c"
version = "0.2.26"

[deps.Tracker.extensions]
TrackerPDMatsExt = "PDMats"

[deps.Tracker.weakdeps]
PDMats = "90014a1f-27ba-587c-ab20-58faa44d9150"

[[deps.TranscodingStreams]]
deps = ["Random", "Test"]
git-tree-sha1 = "9a6ae7ed916312b41236fcef7e0af564ef934769"
Expand Down Expand Up @@ -1120,6 +1211,12 @@ git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d"
uuid = "700de1a5-db45-46bc-99cf-38207098b444"
version = "0.2.3"

[[deps.cuDNN]]
deps = ["CEnum", "CUDA", "CUDNN_jll"]
git-tree-sha1 = "ee79f97d07bf875231559f9b3f2649f34fac140b"
uuid = "02a925ec-e4fe-4b08-9a7e-0d78e3d38ccd"
version = "1.1.0"

[[deps.libblastrampoline_jll]]
deps = ["Artifacts", "Libdl"]
uuid = "8e850b90-86db-534c-a0d3-1478176c7d93"
Expand Down
1 change: 1 addition & 0 deletions benchmark/Project.toml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -12,6 +12,7 @@ SpecialFunctions = "276daf66-3868-5448-9aa4-cd146d93841b"
TaylorDiff = "b36ab563-344f-407b-a36a-4f200bebf99c"
TaylorSeries = "6aa5eb33-94cf-58f4-a9d0-e4b2c4fc25ea"
Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f"
SliceMap = "82cb661a-3f19-5665-9e27-df437c7e54c8"

[compat]
Zygote = "0.6.55"
Expand Down
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