PEM post-refactor #328
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| # Workflow derived from https://github.com/r-lib/actions/tree/master/examples | |
| # Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help | |
| on: | |
| push: | |
| branches: [main, master] | |
| pull_request: | |
| branches: [main, master] | |
| name: R-CMD-check | |
| jobs: | |
| R-CMD-check: | |
| runs-on: ${{ matrix.config.os }} | |
| name: ${{ matrix.config.os }} (${{ matrix.config.r }}) | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - { os: macOS-latest, r: "release" } | |
| - { os: windows-latest, r: "release" } | |
| - { os: ubuntu-latest, r: "release" } | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| R_KEEP_PKG_SOURCE: yes | |
| _R_CHECK_FORCE_SUGGESTS_: "0" # CRAN sets to false | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: r-lib/actions/setup-pandoc@v2 | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: ${{ matrix.config.r }} | |
| http-user-agent: ${{ matrix.config.http-user-agent }} | |
| use-public-rspm: true | |
| - uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| extra-packages: rcmdcheck, survival, flexsurv, testthat, usethis, vdiffr, tibble, xml2, knitr, rmarkdown, bayesplot, matrixcalc, WeightIt, MatchIt, BayesPPD, ggsurvfit, gbm, ggplot2, cobalt, table1, gt, gtsummary | |
| dependencies: '"hard"' | |
| cache: false | |
| - name: Install system dependencies on Linux | |
| if: runner.os == 'Linux' | |
| run: | | |
| sudo apt-get update -y | |
| sudo apt-get install -y texlive-fonts-extra | |
| - name: R CMD check before cmdstanr installed | |
| uses: r-lib/actions/check-r-package@v2 | |
| - name: Install cmdstanr but not cmdstan | |
| run: | | |
| Rscript -e "install.packages('cmdstanr', repos = c('https://stan-dev.r-universe.dev', getOption('repos')))" | |
| - name: R CMD check after cmdstanr installed but before cmdstan | |
| uses: r-lib/actions/check-r-package@v2 | |
| - name: Install cmdstan | |
| run: | | |
| Rscript -e "cmdstanr::check_cmdstan_toolchain(fix = TRUE)" | |
| Rscript -e "cmdstanr::install_cmdstan()" | |
| - name: R CMD check after cmdstanr and cmdstan are installed | |
| uses: r-lib/actions/check-r-package@v2 |