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Merge branch 'main' into feature/#328/geos-v10.17.6/gocart2g/new-extdata
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sdrabenh authored Feb 14, 2022
2 parents 72aa0d4 + 9c901fc commit 86a533a
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102 changes: 13 additions & 89 deletions .circleci/config.yml
Original file line number Diff line number Diff line change
@@ -1,49 +1,7 @@
version: 2.1

executors:
gfortran-large:
docker:
- image: gmao/ubuntu20-geos-env-bcs:v6.2.8-openmpi_4.0.6-gcc_11.2.0-bcs_v10.19.4
auth:
username: $DOCKERHUB_USER
password: $DOCKERHUB_AUTH_TOKEN
environment:
OMPI_ALLOW_RUN_AS_ROOT: 1
OMPI_ALLOW_RUN_AS_ROOT_CONFIRM: 1
OMPI_MCA_btl_vader_single_copy_mechanism: none
resource_class: large
#MEDIUM# resource_class: medium

gfortran-xlarge:
docker:
- image: gmao/ubuntu20-geos-env-bcs:v6.2.8-openmpi_4.0.6-gcc_11.2.0-bcs_v10.19.4
auth:
username: $DOCKERHUB_USER
password: $DOCKERHUB_AUTH_TOKEN
environment:
OMPI_ALLOW_RUN_AS_ROOT: 1
OMPI_ALLOW_RUN_AS_ROOT_CONFIRM: 1
OMPI_MCA_btl_vader_single_copy_mechanism: none
resource_class: xlarge
#MEDIUM# resource_class: medium

ifort-large:
docker:
- image: gmao/ubuntu20-geos-env-bcs:v6.2.8-intelmpi_2021.3.0-intel_2021.3.0-bcs_v10.19.4
auth:
username: $DOCKERHUB_USER
password: $DOCKERHUB_AUTH_TOKEN
resource_class: large
#MEDIUM# resource_class: medium

ifort-xlarge:
docker:
- image: gmao/ubuntu20-geos-env-bcs:v6.2.8-intelmpi_2021.3.0-intel_2021.3.0-bcs_v10.19.4
auth:
username: $DOCKERHUB_USER
password: $DOCKERHUB_AUTH_TOKEN
resource_class: xlarge
#MEDIUM# resource_class: medium
orbs:
circleci-tools: geos-esm/[email protected]

workflows:
build-test:
Expand Down Expand Up @@ -72,55 +30,21 @@ jobs:
parameters:
compiler:
type: string
executor: << parameters.compiler >>-large
executor:
name: circleci-tools/<< parameters.compiler >>
resource_class: large
working_directory: /root/project
steps:
- checkout:
path: GEOSgcm
- run:
name: "Versions etc"
command: mpirun --version && << parameters.compiler>> --version && echo $BASEDIR && pwd && ls
- run:
name: "Mepo clone external repos"
command: |
cd ${CIRCLE_WORKING_DIRECTORY}/GEOSgcm
mepo clone
mepo status
- run:
name: "Mepo checkout-if-exists"
command: |
cd ${CIRCLE_WORKING_DIRECTORY}/GEOSgcm
echo "${CIRCLE_BRANCH}"
if [ "${CIRCLE_BRANCH}" != "develop" ] && [ "${CIRCLE_BRANCH}" != "main" ]
then
mepo checkout-if-exists ${CIRCLE_BRANCH}
fi
mepo status
- run:
name: "CMake"
command: |
mkdir -p /logfiles
cd ${CIRCLE_WORKING_DIRECTORY}/GEOSgcm
mkdir -p ${CIRCLE_WORKING_DIRECTORY}/workspace/build-GEOSgcm
cd ${CIRCLE_WORKING_DIRECTORY}/workspace/build-GEOSgcm
cmake ${CIRCLE_WORKING_DIRECTORY}/GEOSgcm -DBASEDIR=$BASEDIR/Linux -DCMAKE_Fortran_COMPILER=<< parameters.compiler >> -DCMAKE_BUILD_TYPE=Debug -DCMAKE_INSTALL_PREFIX=${CIRCLE_WORKING_DIRECTORY}/workspace/install-GEOSgcm -DUSE_F2PY=OFF |& tee /logfiles/cmake.log
- run:
name: "Build and install"
command: |
cd ${CIRCLE_WORKING_DIRECTORY}/workspace/build-GEOSgcm
make -j"$(nproc)" install |& tee /logfiles/make.log
#MEDIUM# make -j4 install |& tee /logfiles/make.log
- run:
name: "Retry build and install after failure"
command: |
cd ${CIRCLE_WORKING_DIRECTORY}/workspace/build-GEOSgcm
make -j"$(nproc)" install |& tee /logfiles/make-retry.log
#MEDIUM# make -j4 install |& tee /logfiles/make-retry.log
when: on_fail
- run:
name: "Compress artifacts"
command: |
gzip -9 /logfiles/*
- circleci-tools/versions:
compiler: << parameters.compiler >>
- circleci-tools/mepoclone
- circleci-tools/checkout_if_exists
- circleci-tools/cmake:
compiler: << parameters.compiler >>
- circleci-tools/buildinstall
- circleci-tools/compress_artifacts
- store_artifacts:
path: /logfiles
# We need to persist the install for the next step
Expand Down
27 changes: 26 additions & 1 deletion CHANGELOG.md
Original file line number Diff line number Diff line change
@@ -1,7 +1,32 @@
# Changelog

## Unreleased
### This is based off of 10.17.6, but runs MAPL v.2.6.8 so GAAS2G can work. Also has GOCART2G.

## [10.21.1] - 2022-02-14

### Zero-diff to Previous Release: YES
### Restart Changes: NO

Major Zero-Diff Changes:
1. Add CLDXXSW diagnostics and many cosmetic changes to Solar GC by @dr0cloud in [#510](https://github.com/GEOS-ESM/GEOSgcm_GridComp/pull/510)
2. Add additional radiation RRTMG tau and water path diagnostics by @dr0cloud in [#519](https://github.com/GEOS-ESM/GEOSgcm_GridComp/pull/519)
3. Simple fix to prevent negative tauaer in RRTMG LW by @dr0cloud in [#521](https://github.com/GEOS-ESM/GEOSgcm_GridComp/pull/521)
4. Add RRTMGP as a fork in GEOS by @mathomp4 in [#528](https://github.com/GEOS-ESM/GEOSgcm_GridComp/pull/528)
5. Update RRTMGP file locations and half gpoints by @mathomp4 in [#294](https://github.com/GEOS-ESM/GEOSgcm_App/pull/294)
6. Cleanup of Catchment model constants by @gmao-rreichle in [#525](https://github.com/GEOS-ESM/GEOSgcm_GridComp/pull/525)
7. Removed redundant code: DQS calc, QC constraint, RA calc by @gmao-rreichle in [#518](https://github.com/GEOS-ESM/GEOSgcm_GridComp/pull/518)
8. Fix `mk_GEOSldasRestart` for `catchcnclm45` by @weiyuan-jiang in [#516](https://github.com/GEOS-ESM/GEOSgcm_GridComp/pull/516)
9. `make_bcs` clarification of options by @biljanaorescanin in [#517](https://github.com/GEOS-ESM/GEOSgcm_GridComp/pull/517)
10. Bug fix for `RUNSRF` units in Catchment by @gmao-rreichle in [#535](https://github.com/GEOS-ESM/GEOSgcm_GridComp/pull/535)
11. Cleanup of `gndtmp[_cn]()` by @gmao-jkolassa in [#536](https://github.com/GEOS-ESM/GEOSgcm_GridComp/pull/536)
12. New peat hydrology (PEATCLSM) by @biljanaorescanin in [#524](https://github.com/GEOS-ESM/GEOSgcm_GridComp/pull/524)
13. Add `LDAS_INCR` to `AGCM.rc.tmpl` for land-atmos coupled das by @saraqzhang in [#288](https://github.com/GEOS-ESM/GEOSgcm_App/pull/288)
14. Fixes for C12 MOM6 by @mathomp4 in [#](https://github.com/GEOS-ESM/GEOSgcm_App/pull/285)
15. Updates for handling CS ocean by @mathomp4 in [#287](https://github.com/GEOS-ESM/GEOSgcm_App/pull/287)
16. Update for NAS Runs by @mathomp4 in [#291](https://github.com/GEOS-ESM/GEOSgcm_App/pull/291)
17. Compress CircleCI Artifacts by @mathomp4 in [#513](https://github.com/GEOS-ESM/GEOSgcm_GridComp/pull/513)
18. Use circleci-tools orb for CI by @mathomp4 in [#242](https://github.com/GEOS-ESM/GMAO_Shared/pull/242)


## [10.21.0] - 2021-12-21

Expand Down
2 changes: 1 addition & 1 deletion CMakeLists.txt
Original file line number Diff line number Diff line change
Expand Up @@ -4,7 +4,7 @@ cmake_policy (SET CMP0054 NEW)

project (
GEOSgcm
VERSION 10.21.0
VERSION 10.21.1
LANGUAGES Fortran CXX C) # Note - CXX is required for ESMF

if ("${PROJECT_SOURCE_DIR}" STREQUAL "${PROJECT_BINARY_DIR}")
Expand Down
33 changes: 25 additions & 8 deletions CMakePresets.json
Original file line number Diff line number Diff line change
Expand Up @@ -14,8 +14,7 @@
"binaryDir": "${sourceDir}/build-${presetName}",
"cacheVariables": {
"BASEDIR": "$env{BASEDIR}",
"CMAKE_INSTALL_PREFIX": "${sourceDir}/install-${presetName}",
"CMAKE_BUILD_TYPE": "${presetName}"
"CMAKE_INSTALL_PREFIX": "${sourceDir}/install-${presetName}"
}
},
{
Expand All @@ -38,37 +37,55 @@
"name": "Release",
"inherits": "base-gnu",
"displayName": "Release Configure",
"description": "Release build using GNU Make generator"
"description": "Release build using GNU Make generator",
"cacheVariables": {
"CMAKE_BUILD_TYPE": "Release"
}
},
{
"name": "Debug",
"inherits": "base-gnu",
"displayName": "Debug Configure",
"description": "Debug build using GNU Make generator"
"description": "Debug build using GNU Make generator",
"cacheVariables": {
"CMAKE_BUILD_TYPE": "Debug"
}
},
{
"name": "Aggressive",
"inherits": "base-gnu",
"displayName": "Aggressive Configure",
"description": "Aggressive build using GNU Make generator"
"description": "Aggressive build using GNU Make generator",
"cacheVariables": {
"CMAKE_BUILD_TYPE": "Aggressive"
}
},
{
"name": "Release-Ninja",
"inherits": "base-ninja",
"displayName": "Release Ninja Configure",
"description": "Release build using Ninja generator"
"description": "Release build using Ninja generator",
"cacheVariables": {
"CMAKE_BUILD_TYPE": "Release"
}
},
{
"name": "Debug-Ninja",
"inherits": "base-ninja",
"displayName": "Debug Ninja Configure",
"description": "Debug build using Ninja generator"
"description": "Debug build using Ninja generator",
"cacheVariables": {
"CMAKE_BUILD_TYPE": "Debug"
}
},
{
"name": "Aggressive-Ninja",
"inherits": "base-ninja",
"displayName": "Aggressive Ninja Configure",
"description": "Aggressive build using Ninja generator"
"description": "Aggressive build using Ninja generator",
"cacheVariables": {
"CMAKE_BUILD_TYPE": "Aggressive"
}
}
],
"buildPresets": [
Expand Down
15 changes: 8 additions & 7 deletions README.md
Original file line number Diff line number Diff line change
Expand Up @@ -13,22 +13,23 @@
| Repository | Version |
| ---------- | ------- |
| [CPLFCST_Etc](https://github.com/GEOS-ESM/CPLFCST_Etc) | [v1.0.1](https://github.com/GEOS-ESM/CPLFCST_Etc/releases/tag/v1.0.1) |
| [ecbuild](https://github.com/GEOS-ESM/ecbuild) | [geos/v1.0.6](https://github.com/GEOS-ESM/ecbuild/releases/tag/geos%2Fv1.0.6) |
| [ESMA_cmake](https://github.com/GEOS-ESM/ESMA_cmake) | [v3.8.0](https://github.com/GEOS-ESM/ESMA_cmake/releases/tag/v3.8.0) |
| [ESMA_env](https://github.com/GEOS-ESM/ESMA_env) | [v3.10.0](https://github.com/GEOS-ESM/ESMA_env/releases/tag/v3.10.0) |
| [ecbuild](https://github.com/GEOS-ESM/ecbuild) | [geos/v1.2.0](https://github.com/GEOS-ESM/ecbuild/releases/tag/geos%2Fv1.2.0) |
| [ESMA_cmake](https://github.com/GEOS-ESM/ESMA_cmake) | [v3.10.0](https://github.com/GEOS-ESM/ESMA_cmake/releases/tag/v3.10.0) |
| [ESMA_env](https://github.com/GEOS-ESM/ESMA_env) | [v3.11.0](https://github.com/GEOS-ESM/ESMA_env/releases/tag/v3.11.0) |
| [FMS](https://github.com/GEOS-ESM/FMS) | [geos/2019.01.02+noaff.7](https://github.com/GEOS-ESM/FMS/releases/tag/geos%2F2019.01.02%2Bnoaff.7) |
| [FVdycoreCubed_GridComp](https://github.com/GEOS-ESM/FVdycoreCubed_GridComp) | [v1.6.0](https://github.com/GEOS-ESM/FVdycoreCubed_GridComp/releases/tag/v1.6.0) |
| [geos-chem](https://github.com/GEOS-ESM/geos-chem) | [geos/v13.0.0-rc1](https://github.com/GEOS-ESM/geos-chem/releases/tag/geos%2Fv13.0.0-rc1) |
| [GEOSchem_GridComp](https://github.com/GEOS-ESM/GEOSchem_GridComp) | [v1.7.0](https://github.com/GEOS-ESM/GEOSchem_GridComp/releases/tag/v1.7.0) |
| [GEOSgcm_App](https://github.com/GEOS-ESM/GEOSgcm_App) | [v1.6.1](https://github.com/GEOS-ESM/GEOSgcm_App/releases/tag/v1.6.1) |
| [GEOSgcm_GridComp](https://github.com/GEOS-ESM/GEOSgcm_GridComp) | [v1.14.0](https://github.com/GEOS-ESM/GEOSgcm_GridComp/releases/tag/v1.14.0) |
| [GEOSgcm_App](https://github.com/GEOS-ESM/GEOSgcm_App) | [v1.6.2](https://github.com/GEOS-ESM/GEOSgcm_App/releases/tag/v1.6.1) |
| [GEOSgcm_GridComp](https://github.com/GEOS-ESM/GEOSgcm_GridComp) | [v1.14.1](https://github.com/GEOS-ESM/GEOSgcm_GridComp/releases/tag/v1.14.1) |
| [GFDL_atmos_cubed_sphere](https://github.com/GEOS-ESM/GFDL_atmos_cubed_sphere) | [geos/v1.3.0](https://github.com/GEOS-ESM/GFDL_atmos_cubed_sphere/releases/tag/geos%2Fv1.3.0) |
| [GMAO_Shared](https://github.com/GEOS-ESM/GMAO_Shared) | [v1.5.0](https://github.com/GEOS-ESM/GMAO_Shared/releases/tag/v1.5.0) |
| [GMAO_Shared](https://github.com/GEOS-ESM/GMAO_Shared) | [v1.5.1](https://github.com/GEOS-ESM/GMAO_Shared/releases/tag/v1.5.1) |
| [GOCART](https://github.com/GEOS-ESM/GOCART) | [v1.0.1](https://github.com/GEOS-ESM/GOCART/releases/tag/v1.0.1) |
| [HEMCO](https://github.com/GEOS-ESM/HEMCO) | [geos/v2.2.1](https://github.com/GEOS-ESM/HEMCO/releases/tag/geos%2Fv2.2.1) |
| [MAPL](https://github.com/GEOS-ESM/MAPL) | [v2.15.1](https://github.com/GEOS-ESM/MAPL/releases/tag/v2.15.1) |
| [MAPL](https://github.com/GEOS-ESM/MAPL) | [v2.17.0](https://github.com/GEOS-ESM/MAPL/releases/tag/v2.17.0) |
| [MOM5](https://github.com/GEOS-ESM/MOM5) | [geos/5.1.0+1.2.0](https://github.com/GEOS-ESM/MOM5/releases/tag/geos%2F5.1.0%2B1.2.0) |
| [MOM6](https://github.com/GEOS-ESM/MOM6) | [geos/v2.0.2](https://github.com/GEOS-ESM/MOM6/releases/tag/geos%2Fv2.0.2) |
| [RRTMGP](https://github.com/GEOS-ESM/rte-rrtmgp) | [geos/v1.5+1.0.0](https://github.com/GEOS-ESM/rte-rrtmgp/releases/tag/geos%2Fv1.5%2B1.0.0)
| [NCEP_Shared](https://github.com/GEOS-ESM/NCEP_Shared) | [v1.2.0](https://github.com/GEOS-ESM/NCEP_Shared/releases/tag/v1.2.0) |
| [UMD_Etc](https://github.com/GEOS-ESM/UMD_Etc) | [v1.0.4](https://github.com/GEOS-ESM/UMD_Etc/releases/tag/v1.0.4) |

Expand Down
15 changes: 11 additions & 4 deletions components.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -5,19 +5,19 @@ GEOSgcm:
env:
local: ./@env
remote: ../ESMA_env.git
tag: v3.10.0
tag: v3.11.0
develop: main

cmake:
local: ./@cmake
remote: ../ESMA_cmake.git
tag: v3.8.0
tag: v3.10.0
develop: develop

ecbuild:
local: ./@cmake/@ecbuild
remote: ../ecbuild.git
tag: geos/v1.0.6
tag: geos/v1.2.0

NCEP_Shared:
local: ./src/Shared/@NCEP_Shared
Expand All @@ -29,7 +29,7 @@ NCEP_Shared:
GMAO_Shared:
local: ./src/Shared/@GMAO_Shared
remote: ../GMAO_Shared.git
tag: v1.5.0
tag: v1.5.1
sparse: ./config/GMAO_Shared.sparse
develop: main

Expand Down Expand Up @@ -101,6 +101,13 @@ mom6:
develop: dev/gfdl
recurse_submodules: true

RRTMGP:
local: ./src/Components/@GEOSgcm_GridComp/GEOSagcm_GridComp/GEOSphysics_GridComp/GEOSradiation_GridComp/GEOS_RadiationShared/@RRTMGP
remote: ../rte-rrtmgp.git
tag: geos/v1.5+1.0.0
develop: geos/develop
sparse: ./config/RRTMGP.sparse

GEOSgcm_App:
local: ./src/Applications/@GEOSgcm_App
remote: ../GEOSgcm_App.git
Expand Down
2 changes: 2 additions & 0 deletions config/RRTMGP.sparse
Original file line number Diff line number Diff line change
@@ -0,0 +1,2 @@
/*
!/rrtmgp/data

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