add all targetClass to ontology #341
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| name: CI pipeline | |
| on: | |
| push: | |
| branches-ignore: | |
| - main | |
| jobs: | |
| create-file: | |
| name: Create VARIABLES.md file on change within Branch | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v4 | |
| - name: Set up Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: 3.12.0 | |
| - name: Install additional libraries | |
| run: pip install -r src/requirements_ci.txt | |
| - name: Run Python script | |
| run: python3 src/readme_generator.py | |
| working-directory: ${{ github.workspace }} | |
| - name: Check for changes | |
| id: check_changes | |
| run: | | |
| if git status --porcelain | grep "VARIABLES.md"; then | |
| echo "CHANGES_FOUND=true" >> $GITHUB_OUTPUT | |
| else | |
| echo "CHANGES_FOUND=false" >> $GITHUB_OUTPUT | |
| fi | |
| continue-on-error: true | |
| working-directory: ${{ github.workspace }} | |
| - name: Commit and push changes | |
| if: steps.check_changes.outputs.CHANGES_FOUND == 'true' | |
| run: | | |
| git config --local user.email "[email protected]" | |
| git config --local user.name "GitHub Action" | |
| git add */VARIABLES.md | |
| git commit -s -m "Add VARIABLES.md files" | |
| git push | |
| working-directory: ${{ github.workspace }} | |
| parse-turtle: | |
| name: Check syntax of all changed Turtle files | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v4 | |
| - name: Check for changes in .ttl files | |
| id: check_ttl | |
| run: | | |
| git fetch origin main | |
| CHANGED_TTL=$(git diff --name-only origin/main -- '*.ttl') | |
| if [[ -n "$CHANGED_TTL" ]]; then | |
| echo "TTL_HAS_CHANGED=true" >> $GITHUB_ENV | |
| echo "CHANGED_TTL=$(echo "$CHANGED_TTL" | tr '\n' ' ')" >> $GITHUB_ENV # save files in one line | |
| else | |
| echo "TTL_HAS_CHANGED=false" >> $GITHUB_ENV | |
| echo "Subsequent steps will be skipped as no .ttl files have changed." | |
| fi | |
| - name: Set up Python | |
| if: env.TTL_HAS_CHANGED == 'true' | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: 3.12.0 | |
| - name: Install additional libraries | |
| if: env.TTL_HAS_CHANGED == 'true' | |
| run: pip install -r src/requirements_ci.txt | |
| - name: Run Python script for each changed .ttl file | |
| if: env.TTL_HAS_CHANGED == 'true' | |
| run: | | |
| IFS=' ' # Set the Internal Field Separator to a space | |
| for FILE in ${CHANGED_TTL}; do | |
| echo "Processing changed file: ${FILE}" | |
| python3 -u src/check_ttl_syntax.py "${FILE}" | |
| done | |
| check-jsonld-against-schema: | |
| name: Check jsonld against schema for all changed directories | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v4 | |
| - name: Check for changes in .ttl and .json files | |
| id: check_ttl_or_instance | |
| run: | | |
| git fetch origin main | |
| CHANGED_FILES=$(git diff --name-only origin/main -- '*shacl.ttl' '*instance.json') | |
| if [[ -n "$CHANGED_FILES" ]]; then | |
| CHANGED_DIRS=$(echo "$CHANGED_FILES" | xargs -n1 dirname | sort -u) # just save the directory names | |
| echo "FILES_HAVE_CHANGED=true" >> $GITHUB_ENV | |
| echo "CHANGED_DIRS=$(echo "$CHANGED_DIRS" | tr '\n' ' ')" >> $GITHUB_ENV # save directories in one line | |
| else | |
| echo "FILES_HAVE_CHANGED=false" >> $GITHUB_ENV | |
| echo "Subsequent steps will be skipped as no .ttl or .json files have changed." | |
| fi | |
| - name: Set up Python | |
| if: env.FILES_HAVE_CHANGED == 'true' | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: 3.12.0 | |
| - name: Install additional libraries | |
| if: env.FILES_HAVE_CHANGED == 'true' | |
| run: pip install -r src/requirements_ci.txt | |
| - name: Run Python script for each directory that is affected (either shacl or instance file was changed). | |
| if: env.FILES_HAVE_CHANGED == 'true' | |
| run: | | |
| IFS=' ' # Set the Internal Field Separator to a space | |
| for DIRECTORY in ${CHANGED_DIRS}; do | |
| echo "Processing changed directory: ${DIRECTORY}" | |
| python3 -u src/check_jsonld_against_shacl_schema.py "${DIRECTORY}" | |
| done | |
| check_target_classes_agains_owl_classes: | |
| name: Check target classes in SHACL files against owl classes for all changed directories | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v4 | |
| - name: Check for changes in .ttl | |
| id: check_ttl | |
| run: | | |
| git fetch origin main | |
| CHANGED_FILES=$(git diff --name-only origin/main -- '*.ttl') | |
| if [[ -n "$CHANGED_FILES" ]]; then | |
| CHANGED_DIRS=$(echo "$CHANGED_FILES" | xargs -n1 dirname | sort -u) # just save the directory names | |
| echo "FILES_HAVE_CHANGED=true" >> $GITHUB_ENV | |
| echo "CHANGED_DIRS=$(echo "$CHANGED_DIRS" | tr '\n' ' ')" >> $GITHUB_ENV # save directories in one line | |
| else | |
| echo "FILES_HAVE_CHANGED=false" >> $GITHUB_ENV | |
| echo "Subsequent steps will be skipped as no .ttl files have changed." | |
| fi | |
| - name: Set up Python | |
| if: env.FILES_HAVE_CHANGED == 'true' | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: 3.12.0 | |
| - name: Install additional libraries for ci | |
| if: env.FILES_HAVE_CHANGED == 'true' | |
| run: pip install -r src/requirements_ci.txt | |
| - name: Install additional libraries for federated catalogue script that is being called. | |
| if: env.FILES_HAVE_CHANGED == 'true' | |
| run: pip install -r src/requirements_fc.txt | |
| - name: Run Python script for each directory that is affected (ttl file was changed). | |
| if: env.FILES_HAVE_CHANGED == 'true' | |
| run: | | |
| IFS=' ' # Set the Internal Field Separator to a space | |
| for DIRECTORY in ${CHANGED_DIRS}; do | |
| echo "Processing changed directory: ${DIRECTORY}" | |
| python3 -u src/check_target_classes_against_owl_classes.py "${DIRECTORY}" | |
| done |