ADD MODULE: Famsa guidetree (#3691) #1

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Job	Run time
editorconfig	13s
nf-test-changes	4s
pytest-changes	5s
prettier	25s
nf-core-lint (affy/justrma)	1m 12s
nf-core-lint (bamtools/convert)	56s
nf-core-lint (bamtools/split)	48s
nf-core-lint (bamtools/stats)	1m 9s
nf-core-lint (bases2fastq)	1m 5s
nf-core-lint (basicpy)	50s
nf-core-lint (bbmap/bbsplit)	56s
nf-core-lint (bcftools/merge)	49s
nf-core-lint (bcftools/query)	56s
nf-core-lint (bcl2fastq)	56s
nf-core-lint (bclconvert)	56s
nf-core-lint (bedtools/bamtobed)	48s
nf-core-lint (bedtools/genomecov)	56s
nf-core-lint (bedtools/map)	1m 5s
nf-core-lint (bedtools/merge)	47s
nf-core-lint (bedtools/multiinter)	55s
nf-core-lint (bedtools/shift)	53s
nf-core-lint (bedtools/slop)	48s
nf-core-lint (bedtools/sort)	1m 1s
nf-core-lint (bedtools/subtract)	49s
nf-core-lint (bedtools/unionbedg)	1m 10s
nf-core-lint (busco)	55s
nf-core-lint (bwa/mem)	1m 11s
nf-core-lint (cdhit/cdhitest)	56s
nf-core-lint (cellpose)	1m 11s
nf-core-lint (cellranger/count)	55s
nf-core-lint (cellranger/mkfastq)	1m 8s
nf-core-lint (cellranger/mkgtf)	56s
nf-core-lint (cellranger/mkref)	51s
nf-core-lint (cellranger/mkvdjref)	49s
nf-core-lint (cellranger/multi)	49s
nf-core-lint (cellranger/vdj)	1m 5s
nf-core-lint (centrifuge/centrifuge)	53s
nf-core-lint (chromograph)	1m 2s
nf-core-lint (cnvkit/access)	1m 0s
nf-core-lint (cnvkit/antitarget)	47s
nf-core-lint (cnvkit/batch)	1m 3s
nf-core-lint (cnvkit/call)	58s
nf-core-lint (cnvkit/export)	1m 3s
nf-core-lint (cnvkit/genemetrics)	1m 9s
nf-core-lint (cnvkit/reference)	57s
nf-core-lint (cnvkit/target)	51s
nf-core-lint (cooler/balance)	1m 0s
nf-core-lint (cooler/cload)	1m 2s
nf-core-lint (cooler/digest)	42s
nf-core-lint (cooler/dump)	45s
nf-core-lint (cooler/makebins)	47s
nf-core-lint (cooler/merge)	1m 5s
nf-core-lint (cooler/zoomify)	52s
nf-core-lint (deepvariant)	54s
nf-core-lint (deseq2/differential)	49s
nf-core-lint (eklipse)	53s
nf-core-lint (emboss/cons)	45s
nf-core-lint (ensemblvep/download)	1m 4s
nf-core-lint (ensemblvep/vep)	1m 4s
nf-core-lint (famsa/guidetree)	53s
nf-core-lint (fastk/fastk)	44s
nf-core-lint (fastk/histex)	55s
nf-core-lint (fastqc)	46s
nf-core-lint (fcs/fcsgx)	47s
nf-core-lint (fqtk)	51s
nf-core-lint (gatk/indelrealigner)	1m 4s
nf-core-lint (gatk/realignertargetcreator)	52s
nf-core-lint (gatk/unifiedgenotyper)	57s
nf-core-lint (gatk4/applybqsrspark)	52s
nf-core-lint (gatk4/collectreadcounts)	53s
nf-core-lint (gatk4/determinegermlinecontigploidy)	57s
nf-core-lint (gatk4/germlinecnvcaller)	58s
nf-core-lint (gatk4/postprocessgermlinecnvcalls)	44s
nf-core-lint (gecco/run)	53s
nf-core-lint (gem2/gem2bedmappability)	1m 8s
nf-core-lint (gem2/gemindexer)	44s
nf-core-lint (gem2/gemmappability)	1m 9s
nf-core-lint (genmap/index)	54s
nf-core-lint (genmap/map)	58s
nf-core-lint (geoquery/getgeo)	49s
nf-core-lint (gfastats)	59s
nf-core-lint (gstama/merge)	1m 1s
nf-core-lint (gunzip)	44s
nf-core-lint (hicexplorer/hicpca)	1m 3s
nf-core-lint (hisat2/align)	1m 0s
nf-core-lint (hisat2/build)	55s
nf-core-lint (hlala/preparegraph)	47s
nf-core-lint (hlala/typing)	1m 3s
nf-core-lint (homer/annotatepeaks)	55s
nf-core-lint (icountmini/metagene)	1m 11s
nf-core-lint (instrain/compare)	51s
nf-core-lint (kmcp/compute)	54s
nf-core-lint (kmcp/profile)	1m 2s
nf-core-lint (kmcp/search)	45s
nf-core-lint (kraken2/kraken2)	44s
nf-core-lint (last/dotplot)	1m 6s
nf-core-lint (last/lastdb)	1m 9s
nf-core-lint (last/mafconvert)	50s
nf-core-lint (last/mafswap)	44s
nf-core-lint (last/postmask)	1m 5s
nf-core-lint (last/split)	1m 9s
nf-core-lint (last/train)	53s
nf-core-lint (limma/differential)	49s
nf-core-lint (manta/somatic)	44s
nf-core-lint (manta/tumoronly)	1m 1s
nf-core-lint (mapad/map)	48s
nf-core-lint (metaeuk/easypredict)	42s
nf-core-lint (metaphlan/metaphlan)	55s
nf-core-lint (miniprot/index)	46s
nf-core-lint (mmseqs/cluster)	56s
nf-core-lint (mmseqs/createdb)	51s
nf-core-lint (mmseqs/createtsv)	53s
nf-core-lint (mmseqs/search)	46s
nf-core-lint (msisensorpro/msisomatic)	43s
nf-core-lint (multiqc)	1m 0s
nf-core-lint (mummer)	58s
nf-core-lint (ngmerge)	47s
nf-core-lint (peka)	51s
nf-core-lint (pretextmap)	59s
nf-core-lint (proteus/readproteingroups)	59s
nf-core-lint (pureclip)	47s
nf-core-lint (purecn/run)	1m 4s
nf-core-lint (pyrodigal)	1m 6s
nf-core-lint (rhocall/annotate)	42s
nf-core-lint (salmon/quant)	53s
nf-core-lint (samtools/calmd)	44s
nf-core-lint (samtools/flagstat)	1m 1s
nf-core-lint (samtools/idxstats)	1m 3s
nf-core-lint (samtools/import)	48s
nf-core-lint (samtools/markdup)	1m 0s
nf-core-lint (sentieon/applyvarcal)	46s
nf-core-lint (sentieon/bwaindex)	55s
nf-core-lint (sentieon/bwamem)	1m 5s
nf-core-lint (sentieon/dedup)	1m 6s
nf-core-lint (sentieon/gvcftyper)	1m 5s
nf-core-lint (sentieon/haplotyper)	45s
nf-core-lint (sentieon/varcal)	50s
nf-core-lint (seqkit/fx2tab)	50s
nf-core-lint (seqkit/sliding)	52s
nf-core-lint (seqtk/cutn)	44s
nf-core-lint (sequenzautils/bam2seqz)	46s
nf-core-lint (sequenzautils/gcwiggle)	54s
nf-core-lint (sgdemux)	45s
nf-core-lint (simpleaf/index)	54s
nf-core-lint (simpleaf/quant)	1m 3s
nf-core-lint (snakemake)	52s
nf-core-lint (snpeff/download)	56s
nf-core-lint (snpeff/snpeff)	44s
nf-core-lint (snpsift/annotate)	46s
nf-core-lint (spaceranger/count)	55s
nf-core-lint (spaceranger/mkgtf)	43s
nf-core-lint (spaceranger/mkref)	41s
nf-core-lint (subworkflows/bam_markduplicates_samtools)	51s
nf-core-lint (subworkflows/fastq_align_bwaaln)	32s
nf-core-lint (subworkflows/fastq_fastqc_umitools_fastp)	35s
nf-core-lint (subworkflows/fastq_trim_fastp_fastqc)	34s
nf-core-lint (subworkflows/vcf_annotate_ensemblvep)	45s
nf-core-lint (subworkflows/vcf_annotate_ensemblvep_snpeff)	39s
nf-core-lint (subworkflows/vcf_annotate_snpeff)	43s
nf-core-lint (taxpasta/merge)	59s
nf-core-lint (taxpasta/standardise)	52s
nf-core-lint (tiddit/cov)	45s
nf-core-lint (tiddit/sv)	45s
nf-core-lint (ucsc/bedclip)	53s
nf-core-lint (ucsc/bedgraphtobigwig)	47s
nf-core-lint (ucsc/bedtobigbed)	53s
nf-core-lint (ucsc/bigwigaverageoverbed)	45s
nf-core-lint (ucsc/gtftogenepred)	1m 4s
nf-core-lint (ucsc/liftover)	51s
nf-core-lint (ucsc/wigtobigwig)	53s
nf-core-lint (ultra/align)	55s
nf-core-lint (ultra/index)	1m 4s
nf-core-lint (ultra/pipeline)	55s
nf-core-lint (umitools/dedup)	58s
nf-core-lint (untar)	1m 6s
nf-core-lint (upd)	55s
nf-core-lint (vardictjava)	1m 2s
nf-core-lint (varlociraptor/callvariants)	1m 1s
nf-core-lint (varlociraptor/estimatealignmentproperties)	1m 0s
nf-core-lint (varlociraptor/preprocess)	48s
nf-core-lint (vrhyme/extractunbinned)	50s
nf-core-lint (vrhyme/linkbins)	1m 7s
nf-core-lint (vrhyme/vrhyme)	1m 1s
nf-core-lint (wfmash)	45s
nf-core-lint (windowmasker/mkcounts)	54s
nf-core-lint (windowmasker/ustat)	52s
nf-core-lint (wisecondorx/predict)	52s
nf-core-lint (yahs)	52s
nf-test (fastqc, docker)	47s
nf-test (fastqc, singularity)	1m 4s
nf-test (fastqc, conda)	2m 7s
nf-test (snakemake, docker)	39s
nf-test (snakemake, singularity)	46s
nf-test (snakemake, conda)	2m 50s
confirm-pass	1s
	2h 55m 11s

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ADD MODULE: Famsa guidetree (#3691) #1

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ADD MODULE: Famsa guidetree (#3691) #1

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