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I’d like to see more annotations on the code. |
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Agree with David, more comments would facilitate reproducibility and help document why the data was pulled the way it was. There are also some hard-coded values (column indices, rows to be read in) that I would replace, if possible. |
dimalvovs
commented
Mar 18, 2024
| library(GEOquery) | ||
| sticMethDat=getGEO("GSE155311") | ||
| sticMethDat=sticMethDat[[1]] | ||
| hgscMethDat=getGEO("GSE155760") |
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is this needed? hgscMethDat does not seem to be used later in script
dimalvovs
commented
Mar 18, 2024
| sticClin=pData(phenoData(sticMethDat)) | ||
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| save.image() | ||
| save("sticBeta","sticClin",file="Data/sticDat.Rda") |
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can not get past this line as Data does not exist.
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