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fixing variable time alignment in vera4cast submission
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rqthomas committed Oct 4, 2024
1 parent e94c46f commit ed653bb
Showing 1 changed file with 4 additions and 1 deletion.
5 changes: 4 additions & 1 deletion workflows/glm_aed_flare_v3/combined_run_aed.R
Original file line number Diff line number Diff line change
Expand Up @@ -100,7 +100,8 @@ while(noaa_ready & inflow_ready){
temp_forecast <- forecast_df |>
filter(variable %in% c("temp_1.0m_mean","temp_8.0m_mean")) |>
mutate(depth = ifelse(variable == "temp_1.0m_mean", 1.0, 8.0),
variable = "Temp_C_mean") |>
variable = "Temp_C_mean",
datetime = datetime - lubridate::days(1)) |>
pivot_wider(names_from = depth, names_prefix = 'wtr_', values_from = prediction)

colnames(temp_forecast)[which(colnames(temp_forecast) == paste0('wtr_', min_depth))] <- 'min_depth'
Expand All @@ -125,10 +126,12 @@ while(noaa_ready & inflow_ready){
dplyr::mutate(variable = ifelse(variable == "DO_mgL_mean", "DO_mgL_mean_all_depth", variable),
variable = ifelse(variable == "oxy_mean", "DO_mgL_mean", variable),
depth_m = ifelse(variable == "DO_mgL_mean", 1.6, depth_m),
datetime = ifelse(variable == "DO_mgL_mean", datetime - lubridate::days(1), datetime),
prediction = ifelse(variable == "DO_mgL_mean", prediction/1000*(32),prediction),
variable = ifelse(variable == "Temp_C_mean", "Temp_C_mean_all_depth", variable),
variable = ifelse(variable == "temp_mean", "Temp_C_mean", variable),
depth_m = ifelse(variable == "Temp_C_mean", 1.6, depth_m),
datetime = ifelse(variable == "Temp_C_mean", datetime - lubridate::days(1), datetime),
prediction = ifelse(variable == "fDOM_QSU_mean", (151.3407 + prediction)/29.62654,prediction),
prediction = ifelse(variable == "NIT_amm", prediction/1000/0.001/(1/18.04),prediction),
variable = ifelse(variable == "NIT_amm", "NH4_ugL_sample", variable),
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