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DO June 2024 release
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allenbaron committed Jun 28, 2024
1 parent 22ab9e3 commit 9d7168b
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Showing 159 changed files with 31,205 additions and 3,926 deletions.
4 changes: 2 additions & 2 deletions DOreports/DO-equivalentClass.tsv
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Expand Up @@ -456,8 +456,8 @@ DOID:3918 pancreatic cystadenoma 'benign neoplasm' and ('disease has location' s
DOID:3924 main bronchus cancer cancer and ('disease has location' some 'main bronchus')
DOID:3952 adrenal cortex disease disease and ('disease has location' some 'adrenal cortex')
DOID:3953 adrenal gland cancer cancer and ('disease has location' some 'adrenal gland')
DOID:3962 thyroid gland follicular carcinoma cancer and ('derives from' some 'follicular epithelial cell')
DOID:3973 thyroid gland medullary carcinoma cancer and ('derives from' some 'parafollicular cell')
DOID:3962 follicular thyroid carcinoma cancer and ('derives from' some 'follicular epithelial cell')
DOID:3973 medullary thyroid carcinoma cancer and ('derives from' some 'parafollicular cell')
DOID:3996 urinary system cancer cancer and ('disease has location' some 'renal system')
DOID:403 mouth disease disease and ('disease has location' some 'oral cavity')
DOID:4043 skeletal muscle cancer cancer and ('disease has location' some 'striated muscle tissue')
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23 changes: 19 additions & 4 deletions DOreports/DO-subClassOf-anonymous.tsv
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Expand Up @@ -138,7 +138,7 @@ DOID:0050145 adenoiditis 'has symptom' some 'swelling symptom'|'has symptom' som
DOID:0050150 Pontiac fever 'has symptom' some fever|'has symptom' some headache|'transmitted by' some 'droplet spread transmission'
DOID:0050152 aspiration pneumonia 'has symptom' some dysphagia|'has symptom' some tachypnea
DOID:0050153 pulmonary aspergilloma 'disease has location' some lung|'has material basis in' some Aspergillus
DOID:0050156 interstitial lung disease 2 'has material basis in' some 'autosomal dominant inheritance'|'has material basis in' some ('Abnormal pulmonary interstitial morphology' and ('has material basis in' some Scarring) and ('disease has location' some lung))
DOID:0050156 idiopathic pulmonary fibrosis 'has material basis in' some 'autosomal dominant inheritance'|'has material basis in' some ('Abnormal pulmonary interstitial morphology' and ('has material basis in' some Scarring) and ('disease has location' some lung))
DOID:0050157 cryptogenic organizing pneumonia 'has symptom' some 'weight loss'|'has symptom' some cough|'has symptom' some inflammation
DOID:0050159 lymphoid interstitial pneumonia 'has symptom' some cough
DOID:0050160 inhalation anthrax 'has symptom' some 'chest discomfort'|'has symptom' some 'low-grade fever'|'has symptom' some 'pharynx inflammation'|'has symptom' some cough|'has symptom' some dyspnea|'has symptom' some tiredness
Expand Down Expand Up @@ -602,7 +602,7 @@ DOID:0060486 Perry syndrome 'has material basis in' some 'autosomal dominant inh
DOID:0060488 Pitt-Hopkins syndrome 'has material basis in' some 'autosomal dominant inheritance'
DOID:0060490 Schimke immuno-osseous dysplasia 'has material basis in' some 'autosomal recessive inheritance'
DOID:0060491 SPOAN syndrome 'has material basis in' some 'autosomal recessive inheritance'
DOID:0060492 chicken egg allergy 'has allergic trigger' some 'hen egg food product'
DOID:0060492 chicken egg allergy 'has allergic trigger' some 'chicken egg food product'
DOID:0060495 shellfish allergy 'has allergic trigger' some 'shellfish food product'|'has allergic trigger' some Crustacea|'has allergic trigger' some Mollusca
DOID:0060503 fruit allergy 'has allergic trigger' some 'plant fruit food product'
DOID:0060504 apple allergy 'has allergic trigger' some 'apple food product'
Expand Down Expand Up @@ -655,7 +655,7 @@ DOID:0060587 Noonan syndrome 9 'has material basis in' some 'autosomal dominant
DOID:0060588 Noonan syndrome 10 'has material basis in' some 'autosomal dominant inheritance'
DOID:0060589 Yunis-Varon syndrome 'has material basis in' some 'autosomal recessive inheritance'
DOID:0060590 XFE progeroid syndrome 'has material basis in' some 'autosomal recessive inheritance'
DOID:0060591 WHIM syndrome 'has material basis in' some 'autosomal dominant inheritance'
DOID:0060591 WHIM syndrome 1 'has material basis in' some 'autosomal dominant inheritance'
DOID:0060592 B-cell adult acute lymphocytic leukemia 'existence starts during' some 'Adult onset'|'has material basis in' some 'lymphocyte of B lineage'
DOID:0060599 Nance-Horan syndrome 'has material basis in' some 'X-linked dominant inheritance'
DOID:0060601 alpha-2-plasmin inhibitor deficiency 'has material basis in' some 'autosomal recessive inheritance'|'has symptom' some bleeding
Expand Down Expand Up @@ -807,6 +807,7 @@ DOID:0060857 septooptic dysplasia 'has material basis in' some 'autosomal inheri
DOID:0060858 hypotonia-cystinuria syndrome ('has material basis in' some deletion) and ('has material basis in' some chromosome)
DOID:0060859 salmonellosis 'has symptom' some 'abdominal cramp'|'has symptom' some diarrhea|'has symptom' some vomiting
DOID:0060861 microphthalmia with limb anomalies 'has material basis in' some 'autosomal recessive inheritance'
DOID:0060862 mal de Meleda 'has material basis in' some 'autosomal recessive inheritance'
DOID:0060867 macrocephaly-autism syndrome 'has material basis in' some 'autosomal dominant inheritance'|'has phenotype' some 'Frontal bossing'|'has phenotype' some 'Long philtrum'|'has phenotype' some 'Midface retrusion'|'has phenotype' some 'Square face'|'has phenotype' some Macrocephaly
DOID:0060868 leukoencephalopathy with vanishing white matter 'has material basis in' some 'autosomal recessive inheritance'
DOID:0060871 autosomal dominant keratitis-ichthyosis-deafness syndrome 'has material basis in' some 'autosomal dominant inheritance'
Expand Down Expand Up @@ -872,6 +873,13 @@ DOID:0060966 dystonia 22, juvenile-onset 'has material basis in' some 'autosomal
DOID:0060967 dystonia 22, adult-onset 'has material basis in' some 'autosomal recessive inheritance'
DOID:0060968 hypotrichosis 15 'has material basis in' some 'autosomal recessive inheritance'
DOID:0060970 Cornelia de Lange syndrome 6 'has material basis in' some 'autosomal dominant inheritance'
DOID:0060971 interstitial lung disease 2 'has material basis in' some 'autosomal dominant inheritance'
DOID:0060972 renal hypomagnesemia 7, with or without dilated cardiomyopathy 'has material basis in' some 'autosomal dominant inheritance'
DOID:0060973 WHIM syndrome 2 'has material basis in' some 'autosomal recessive inheritance'
DOID:0060974 autosomal recessive Robinow syndrome 2 'has material basis in' some 'autosomal recessive inheritance'
DOID:0060975 polycystic liver disease 2 'has material basis in' some 'autosomal dominant inheritance'
DOID:0060976 polycystic liver disease 3 with or without kidney cysts 'has material basis in' some 'autosomal dominant inheritance'
DOID:0060977 polycystic liver disease 4 with or without kidney cysts 'has material basis in' some 'autosomal dominant inheritance'
DOID:0070000 3-methylglutaconic aciduria type 8 'has material basis in' some 'autosomal recessive inheritance'
DOID:0070002 3-methylglutaconic aciduria type 9 'has material basis in' some 'autosomal recessive inheritance'
DOID:0070014 autosomal dominant dyskeratosis congenita 1 'has material basis in' some 'autosomal dominant inheritance'
Expand Down Expand Up @@ -1206,6 +1214,13 @@ DOID:0070542 neurodevelopmental disorder with spastic paraplegia and microcephal
DOID:0070543 neurodevelopmental disorder with cardiomyopathy, spasticity, and brain abnormalities 'has material basis in' some 'autosomal recessive inheritance'
DOID:0070544 congenital glutamine deficiency 'has material basis in' some 'autosomal recessive inheritance'
DOID:0070545 developmental and epileptic encephalopathy 116 'has material basis in' some 'autosomal dominant inheritance'
DOID:0070546 primary pigmented nodular adrenocortical disease 1 'has material basis in' some 'autosomal dominant inheritance'
DOID:0070547 primary pigmented nodular adrenocortical disease 2 'has material basis in' some 'autosomal dominant inheritance'
DOID:0070549 primary pigmented nodular adrenocortical disease 4 'has material basis in' some 'autosomal dominant inheritance'
DOID:0070551 epidermolytic palmoplantar keratoderma 2 'has material basis in' some 'autosomal dominant inheritance'
DOID:0070552 epidermolytic palmoplantar keratoderma 1 'has material basis in' some 'autosomal dominant inheritance'
DOID:0070554 palmoplantar keratoderma and woolly hair 'has material basis in' some 'autosomal recessive inheritance'
DOID:0070555 Nagashima-type palmoplantar keratosis 'has material basis in' some 'autosomal recessive inheritance'
DOID:0080007 bone deterioration disease 'disease has location' some 'bone element'
DOID:0080010 bone structure disease 'has phenotype' some 'Abnormal bone structure'
DOID:0080020 Jansen's metaphyseal chondrodysplasia 'has material basis in' some 'autosomal dominant inheritance'|'has phenotype' some 'Disproportionate short-limb short stature'
Expand Down Expand Up @@ -4579,7 +4594,7 @@ DOID:3950 adrenal carcinoma 'derives from' some 'epithelial cell'
DOID:3951 acute myocarditis 'has symptom' some myocarditis
DOID:3959 adrenal cortical adenocarcinoma 'derives from' some ('epithelial cell' and (has_origin some gland))|'disease has location' some 'adrenal cortex'
DOID:396 Loeffler endocarditis 'has symptom' some endocarditis
DOID:3962 thyroid gland follicular carcinoma 'derives from' some ('epithelial cell' and (has_origin some gland))
DOID:3962 follicular thyroid carcinoma 'derives from' some ('epithelial cell' and (has_origin some gland))
DOID:3963 thyroid gland carcinoma 'derives from' some 'epithelial cell'|'disease has location' some 'thyroid gland'
DOID:3965 Merkel cell carcinoma 'disease has location' some 'Merkel cell'
DOID:3981 pantothenate kinase-associated neurodegeneration 'has material basis in' some 'autosomal recessive inheritance'
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8 changes: 5 additions & 3 deletions DOreports/GARDinDO.tsv
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Expand Up @@ -5,7 +5,7 @@ id label xrefs
"DOID:0050083" "Keshan disease"@en "GARD:8761"
"DOID:0050120" "hemophagocytic lymphohistiocytosis"@en "GARD:6589"
"DOID:0050144" "Kartagener syndrome"@en "GARD:6815"
"DOID:0050156" "interstitial lung disease 2"@en "GARD:8609"
"DOID:0050156" "idiopathic pulmonary fibrosis"@en "GARD:8609"
"DOID:0050157" "cryptogenic organizing pneumonia"@en "GARD:1620"
"DOID:0050167" "autoimmune polyendocrine syndrome type 1"@en "GARD:8466"
"DOID:0050168" "autoimmune polyendocrine syndrome type 2"@en "GARD:7611"
Expand Down Expand Up @@ -347,7 +347,7 @@ id label xrefs
"DOID:0060569" "hypertrichotic osteochondrodysplasia Cantu type"@en "GARD:8585"
"DOID:0060589" "Yunis-Varon syndrome"@en "GARD:331"
"DOID:0060590" "XFE progeroid syndrome"@en "GARD:10628"
"DOID:0060591" "WHIM syndrome"@en "GARD:9297"
"DOID:0060591" "WHIM syndrome 1"@en "GARD:9297"
"DOID:0060599" "Nance-Horan syndrome"@en "GARD:7161"
"DOID:0060608" "microcephalic osteodysplastic primordial dwarfism type I"@en "GARD:5120"
"DOID:0060611" "abdominal obesity-metabolic syndrome"@en "GARD:9226"
Expand Down Expand Up @@ -506,6 +506,8 @@ id label xrefs
"DOID:0070540" "mitochondrial short-chain enoyl-CoA hydratase 1 deficiency"@en "GARD:13019"
"DOID:0070541" "3-hydroxy-3-methylglutaryl-CoA lyase deficiency"@en "GARD:8387"
"DOID:0070544" "congenital glutamine deficiency"@en "GARD:9848"
"DOID:0070550" "KRT1-related nonepidermolytic palmoplantar keratoderma"@en "GARD:5186"
"DOID:0070553" "focal palmoplantar and gingival keratosis"@en "GARD:3098"
"DOID:0080016" "spina bifida"@en "GARD:7673"
"DOID:0080021" "Schmid metaphyseal chondrodysplasia"@en "GARD:7029"
"DOID:0080028" "spondyloepimetaphyseal dysplasia, Strudwick type"@en "GARD:134"
Expand Down Expand Up @@ -1798,7 +1800,7 @@ id label xrefs
"DOID:3948" "adrenocortical carcinoma"@en "GARD:558"
"DOID:3953" "adrenal gland cancer"@en "GARD:5751"
"DOID:3965" "Merkel cell carcinoma"@en "GARD:9266"
"DOID:3969" "thyroid gland papillary carcinoma"@en "GARD:12027"
"DOID:3969" "papillary thyroid carcinoma"@en "GARD:12027"
"DOID:3981" "pantothenate kinase-associated neurodegeneration"@en "GARD:6564"
"DOID:3982" "Meige syndrome"@en "GARD:7008"
"DOID:399" "tuberculosis"@en "GARD:7827"
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