DOs January 2023 release

DiseaseOntology · Jan 30, 2023 · 4e3c74a · 4e3c74a
1 parent 3e39286
commit 4e3c74a
Show file tree

Hide file tree

Showing 140 changed files with 228,144 additions and 200,062 deletions.
diff --git a/src/DOreports/HumanDO.tsv b/src/DOreports/HumanDO.tsv
diff --git a/src/DOreports/xrefs_in_DO.tsv b/src/DOreports/xrefs_in_DO.tsv
diff --git a/src/ontology/HumanDO.obo b/src/ontology/HumanDO.obo
diff --git a/src/ontology/HumanDO.owl b/src/ontology/HumanDO.owl
diff --git a/src/ontology/doid-base.owl b/src/ontology/doid-base.owl
diff --git a/src/ontology/doid-edit.owl b/src/ontology/doid-edit.owl
@@ -58027,7 +58027,7 @@ SubClassOf(obo:DOID_0081294 ObjectSomeValuesFrom(obo:IDO_0000664 obo:SO_0002165)
 
 # Class: obo:DOID_0081295 (essential tremor 6)
 
-AnnotationAssertion(obo:IAO_0000115 obo:DOID_0081295 "An essential tremor that is characterized by adult-onset kinetic and/or postural tremor usually affecting the upper limbs and that has_material_basis_in heterozygous trinucleotide GGC repeat expansion in the 5-prime untranslated region of the NOTCH2NLC gene on chromosome 1q21.")
+AnnotationAssertion(Annotation(oboInOwl:hasDbXref "url:https://pubmed.ncbi.nlm.nih.gov/31819945/") obo:IAO_0000115 obo:DOID_0081295 "An essential tremor that is characterized by adult-onset kinetic and/or postural tremor usually affecting the upper limbs and that has_material_basis_in heterozygous trinucleotide GGC repeat expansion in the 5-prime untranslated region of the NOTCH2NLC gene on chromosome 1q21.")
 AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_0081295 "OMIM:618866")
 AnnotationAssertion(oboInOwl:hasOBONamespace obo:DOID_0081295 "disease_ontology")
 AnnotationAssertion(oboInOwl:id obo:DOID_0081295 "DOID:0081295")
@@ -66476,7 +66476,6 @@ AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_0110461 "MESH:C580047"^^xsd:stri
 AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_0110461 "OMIM:302045"^^xsd:string)
 AnnotationAssertion(oboInOwl:hasExactSynonym obo:DOID_0110461 "CMD3B"@en)
 AnnotationAssertion(oboInOwl:hasExactSynonym obo:DOID_0110461 "DMD-related dilated cardiomyopathy"@en)
-AnnotationAssertion(oboInOwl:hasExactSynonym obo:DOID_0110461 "dilated cardiomyopathy 3B"@en)
 AnnotationAssertion(oboInOwl:hasOBONamespace obo:DOID_0110461 "disease_ontology"^^xsd:string)
 AnnotationAssertion(oboInOwl:id obo:DOID_0110461 "DOID:0110461"^^xsd:string)
 AnnotationAssertion(rdfs:label obo:DOID_0110461 "X-linked dilated cardiomyopathy"^^xsd:string)
@@ -169346,7 +169345,7 @@ SubClassOf(obo:DOID_5897 obo:DOID_0060112)
 
 # Class: obo:DOID_5900 (meningeal melanocytoma)
 
-AnnotationAssertion(Annotation(rdfs:comment "url:https://radiopaedia.org/articles/meningeal-melanocytosis?lang=us") obo:IAO_0000115 obo:DOID_5900 "A central nervous system benign neoplasm that is characterized as diffuse or multifocal proliferation of uniform nevoid polygonal cells in the leptomeninges.")
+AnnotationAssertion(Annotation(oboInOwl:hasDbXref "url:https://radiopaedia.org/articles/meningeal-melanocytosis?lang=us") obo:IAO_0000115 obo:DOID_5900 "A central nervous system benign neoplasm that is characterized as diffuse or multifocal proliferation of uniform nevoid polygonal cells in the leptomeninges.")
 AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_5900 "ICDO:8728/1"^^xsd:string)
 AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_5900 "NCI:C4662"^^xsd:string)
 AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_5900 "ORDO:252046")
@@ -182664,7 +182663,6 @@ SubClassOf(obo:DOID_790 obo:DOID_5614)
 # Class: obo:DOID_7902 (adult extraskeletal myxoid chondrosarcoma)
 
 AnnotationAssertion(Annotation(oboInOwl:hasDbXref "url:https://pubmed.ncbi.nlm.nih.gov/35144048/") obo:IAO_0000115 obo:DOID_7902 "An extraskeletal myxoid chondrosarcoma occurring in adults.")
-AnnotationAssertion(oboInOwl:SubsetProperty obo:DOID_7902 doid:NCIthesaurus)
 AnnotationAssertion(oboInOwl:hasAlternativeId obo:DOID_7902 "DOID:6495")
 AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_7902 "NCI:C27378")
 AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_7902 "UMLS:C1706731")