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DanielaSchacherer committed Sep 20, 2024
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2 changes: 1 addition & 1 deletion README.md
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Expand Up @@ -90,7 +90,7 @@ pandas `DataFrame`) of `IDCClient`. Additional index tables such as the
`clinical_index` contain non-DICOM clinical data or slide microscopy specific
tables (indicated by the prefix `sm`) include metadata attributes specific to
slide microscopy images. A description of available attributes for all indices
can be found [here](./docs/column_descriptions.html).
can be found [here](./docs/column_descriptions).

## Tutorial

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8 changes: 0 additions & 8 deletions docs/column_descriptions.md
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`idc-index` is named this way because it wraps indices of IDC data: tables
containing the most important metadata attributes describing the files available
in IDC. The main metadata index is available in the `index` variable (which is a
pandas `DataFrame`) of `IDCClient`. Additional index tables such as the
`clinical_index` contain non-DICOM clinical data or slide microscopy specific
tables (indicated by the prefix `sm`) include metadata attributes specific to
slide microscopy images.

The following is the list of the columns included in `index`. You can use those
to select cohorts and subsetting data. `idc-index` is series-based, i.e, it has
one row per DICOM series.
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