Adding clang-format configuration and script

.gitignore

@@ -23,3 +23,4 @@ p
 /*.txt
 .idea/*
 *.ipynb_checkpoint*
+tools/.format/*

src/Factory.h

@@ -47,7 +47,7 @@ class Factory {
 			ret = (*it)->Produce(input);
 			if (ret) return ret;
 		}
-		return NULL;
+		return nullptr;
 	};
 	// Template class for registration of the worker functions
 	template <Product* (*T)(const Input&)>

src/Geometry.h

@@ -2,6 +2,7 @@
 #define GEOMETRY_H
 
 #include "unit.h"
+#include "pugixml.hpp"
 #include <map>
 /// STL triangle structure
 #ifdef _WIN32

src/Region.h

@@ -1,6 +1,7 @@
 
 #ifndef REGION_H
 #include <stdio.h>
+#include "cross.h"
 class lbRegion {
 public:
   int dx,dy,dz;

src/SolidGrid.h

@@ -7,6 +7,7 @@
 #include <vector>
 #include <set>
 #include <math.h>
+#include "types.h"
 
 typedef int gr_addr_t;
 

src/SolidTree.h

@@ -7,10 +7,7 @@
 #include <vector>
 #include <set>
 #include <math.h>
-
-typedef char tr_flag_t;
-typedef int tr_addr_t;
-typedef double tr_real_t;
+#include "types.h"
 
 struct tr_elem {
     tr_flag_t flag;

src/def.h

@@ -1,2 +1,3 @@
+#include "pugixml.hpp"
 extern pugi::xml_document xml_def;
 int xml_def_init();

src/types.h

@@ -28,6 +28,11 @@
   #define CUT_MAX 65000
   #define CUT_LEN(x__) (0.005f * (x__))
 
+  typedef char tr_flag_t;
+  typedef int tr_addr_t;
+  typedef double tr_real_t;
+
+
 /*
   struct vector_t {
     real_t x,y,z;

tools/.clang-format

@@ -0,0 +1,12 @@
+BasedOnStyle: Google
+ColumnLimit: 160
+IndentWidth: 4
+AllowShortBlocksOnASingleLine: Always
+AllowShortCaseLabelsOnASingleLine: false
+AllowShortFunctionsOnASingleLine: InlineOnly
+AllowShortIfStatementsOnASingleLine: Always
+DerivePointerAlignment: false
+PointerAlignment: Left
+BinPackArguments: false
+BinPackParameters: false
+ReflowComments: false

tools/format.sh

@@ -0,0 +1,144 @@
+#!/bin/bash
+
+set -o pipefail
+
+PP=$(dirname $0)
+FORMATFILE="$PP/.clang-format"
+PRINTSKIP=true
+
+function format {
+	clang-format --style=file:$FORMATFILE \
+	| sed -E 's/for[[:blank:]]*[(]([[:alpha:]_]*[[:blank:]]|)[[:blank:]]*([[:alnum:]_]+)[[:blank:]]*=[[:blank:]]*([[:alnum:]_]+)[[:blank:]]*;[[:blank:]]*([[:alnum:]_]+)[[:blank:]]*([<=]*)[[:blank:]]*([[:alnum:]_]+)[[:blank:]]*;[[:blank:]]*([[:alnum:]_]+)[+][+][[:blank:]]*\)/for (\1\2=\3; \4\5\6; \7++)/g' \
+	| sed -E 's| ([*/]) |\1|g'
+}
+
+function formatRT {
+	R -s -e 'rtemplate::RTtokenize()' | format | R -s -e 'rtemplate::RTtokenize(inv=TRUE)'
+}
+
+function format_sel {
+	if [[ -z "$1" || "$1" =~ \.[rR][tT]$ ]]
+	then
+		echo formatRT
+	else
+		echo format
+	fi
+}
+
+function format_to {
+	F="$(format_sel "$1")"
+	if test -z "$1" || test -z "$2"
+	then
+		echo "Something went wrong in format_to"
+		exit 5
+	fi
+	mkdir -p $PP/.format
+	NAMESUM=$(echo "$1 $2" | sha256sum | cut -c 1-30)
+	SUMFILE="$PP/.format/$NAMESUM"
+	if test -f "$SUMFILE"
+	then
+		if sha256sum --status --check "$SUMFILE"
+		then
+			$PRINTSKIP && echo "Skipping $1"
+			return 0
+		fi
+	fi
+	if [[ "$1" == "$2" ]]
+	then
+		echo "Running $F on $1"
+	else
+		echo "Running $F on $1 -> $2"
+	fi
+	cat "$1" | $F >tmp
+	mv tmp "$2"
+	sha256sum "$1" "$2" "$FORMATFILE" >"$SUMFILE"	
+}
+
+OUTFILE=""
+OUTSAME=false
+while test -n "$1"
+do
+	case "$1" in
+	--help)
+		echo ""
+		echo "$0 [--all] [-o output] [-x] [files]"
+		echo ""
+		echo "  -o (--output) OUTPUT        : put the formated output in OUTPUT"
+		echo "  -x (--overwrite)            : put the formated output in the same file"
+		echo "  --all [FROM_DIR] [TO_DIR]   : format all source files in DIR"
+		echo ""
+		exit 0;
+		;;
+	-o|--output)
+		shift
+		OUTFILE="$1"
+		;;
+	-x|--overwrite)
+		OUTSAME=true
+		;;
+	-a|--all)
+		shift
+		FROM_DIR="src"
+		if ! test -z "$1"
+		then
+			if ! test -d "$1"
+			then
+				echo "$1: not a directory"
+				exit 3
+			fi
+			FROM_DIR="$1"
+			shift
+		fi
+		TO_DIR="$FROM_DIR"
+		if ! test -z "$1"
+		then
+			if ! test -d "$1"
+			then
+				echo "$1: not a directory"
+				exit 3
+			fi
+			TO_DIR="$1"
+			shift
+		fi
+		if test "$FROM_DIR" == "$TO_DIR" && ! $OUTSAME
+		then
+			echo "Trying to format all file into the same directory. If you want to overwrite say '-x'"
+			exit 4
+		fi
+		PRINTSKIP=false
+		find "$FROM_DIR" | grep -E '[.](cpp|h|hpp)([.]Rt|)$' | while read i
+		do
+			if test "$FROM_DIR" == "$TO_DIR"
+			then
+				j="$i"
+			else
+				j="$TO_DIR/${i#$FROM_DIR}"
+			fi
+			format_to "$i" "$j"
+		done
+		;;
+	-p|--pipe)
+		formatRT
+		;;
+	-*)
+		echo "Uknown option $1"
+		exit 1;
+		;;
+	*)
+		INFILE="$1"
+		if $OUTSAME && test -z "$OUTFILE"
+		then
+			OUTFILE="$INFILE"
+		fi
+		if test -z $OUTFILE
+		then
+			cat "$INFILE" | $(format_sel "$INFILE")
+		else
+			format_to "$INFILE" "$OUTFILE"
+			OUTFILE=""
+		fi
+	esac
+	shift
+done
+
+exit 0