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update version
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benpullman committed May 15, 2020
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2 changes: 1 addition & 1 deletion Makefile
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include ../Makefile.deploytemplate

TOOL_FOLDER_NAME=generate_spectrum_index
WORKFLOW_VERSION=0.1
WORKFLOW_VERSION=0.2
WORKFLOW_LABEL="Spectrum Index Generation"
WORKFLOW_DESCRIPTION="This is a script to read spectrum peak files and output the nativeID, MS-level, and MS2+ index (defined as the 0-based index for all spectra of MS-level 2 and higher) for each spectrum. Supported input types are mzML, mzML.gz, mzXML, and mgf.<br /><br />A note on the nativeID column. For mzML and mzML.gz the nativeID is read directly, for mzXML it is constructed as a scan=, and for mgf it is constructed as scan= IF there is a SCANS= field in the MGF, otherwise it is constructed as index= and is the 0-based index of all spectra in the file."
5 changes: 3 additions & 2 deletions README.md
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## Spectrum Index Generation

#### Version: 0.1
#### Version: 0.2

#### Description:
This is a script to read spectrum peak files and output the nativeID, MS-level, and MS2+ index (defined as the 0-based index for all spectra of MS-level 2 and higher) for each spectrum. Supported input types are mzML, mzML.gz, mzXML, and mgf.<br /><br />A note on the nativeID column. For mzML and mzML.gz the nativeID is read directly, for mzXML it is constructed as a scan=, and for mgf it is constructed as scan= IF there is a SCANS= field in the MGF, otherwise it is constructed as index= and is the 0-based index of all spectra in the file.

_Last updated: Thu Apr 16 10:40:00 2020._
_Last updated: Fri May 15 08:13:58 2020._

<data id=CCMS_DEPLOYMENTS_HEADER_BREAK_ELEMENT_CAUTION_ANYTHING_ABOVE_WILL_BE_AUTOGENERATED />



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