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Allow API configuration to preserve the axons during setup #155

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merged 6 commits into from
Jul 24, 2024
Merged

Allow API configuration to preserve the axons during setup #155

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ed80d0b
Allow API configuration to preserve the axons during setup
ferdonline Apr 18, 2024
3b7a5ad
Merge branch 'main' into leite/propagate_cli_keep_axon_to_circuits
ferdonline Jun 5, 2024
944b15d
Merge branch 'main' into leite/propagate_cli_keep_axon_to_circuits
ferdonline Jun 12, 2024
1372de1
Merge branch 'main' into leite/propagate_cli_keep_axon_to_circuits
ferdonline Jul 1, 2024
166ca9f
Merge branch 'main' into leite/propagate_cli_keep_axon_to_circuits
ferdonline Jul 8, 2024
4ead169
Merge branch 'main' into leite/propagate_cli_keep_axon_to_circuits
WeinaJi Jul 24, 2024
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6 changes: 6 additions & 0 deletions neurodamus/core/configuration.py
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Original file line number Diff line number Diff line change
Expand Up @@ -76,6 +76,7 @@ class CliOptions(ConfigT):
simulator = None
dry_run = False
num_target_ranks = None
keep_axon = False

# Restricted Functionality support, mostly for testing

Expand Down Expand Up @@ -579,7 +580,12 @@ def _extra_circuits(config: _SimConfig, run_conf):
if field in config.base_circuit and field not in circuit_info:
log_verbose(" > Inheriting '%s' from base circuit", field)
circuit_info[field] = config.base_circuit[field]

circuit_info.setdefault("nrnPath", False)
if config.cli_options.keep_axon and circuit_info["Engine"].__name__ == "METypeEngine":
log_verbose("Keeping axons ENABLED")
circuit_info.setdefault("DetailedAxon", True)

extra_circuits[name] = _make_circuit_config(circuit_info, req_morphology=False)
extra_circuits[name]._name = name

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