Clean up wheel contents.

Fixes #143. Replaces `setuptools`, which seems very happy to just add everything in the current directory into the source distribution with `hatch`, which is much, much, much more reasonable. Also: * Delete now obsolete `MANIFEST.in` * Delete outdated, non-functional `_debug.py` * Move `init.py` into `neurodamus/data` to properly compartmentalize it SPACK_BRANCH=clean-pydamus SPACK_DEPLOYMENT_SUFFIX=pulls/2358
BlueBrain · Mar 20, 2024 · aab9eaf · aab9eaf
1 parent b978f40
commit aab9eaf
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Showing 24 changed files with 14 additions and 22 deletions.
diff --git a/.github/workflows/simulation_test.yml b/.github/workflows/simulation_test.yml
@@ -96,10 +96,10 @@ jobs:
         cp core/hoc/* tests/share/hoc/
         export HOC_LIBRARY_PATH=$(pwd)/tests/share/hoc
         # launch simulation with NEURON
-        mpirun -np 2 ./x86_64/special -mpi -python init.py --configFile=tests/simulations/usecase3/simulation_sonata.json
+        mpirun -np 2 ./x86_64/special -mpi -python neurodamus/data/init.py --configFile=tests/simulations/usecase3/simulation_sonata.json
         ls tests/simulations/usecase3/reporting/*.h5
         # launch simulation with CORENEURON
-        mpirun -np 2 ./x86_64/special -mpi -python init.py --configFile=tests/simulations/usecase3/simulation_sonata_coreneuron.json
+        mpirun -np 2 ./x86_64/special -mpi -python neurodamus/data/init.py --configFile=tests/simulations/usecase3/simulation_sonata_coreneuron.json
         ls tests/simulations/usecase3/reporting_coreneuron/*.h5
 
     # - name: live debug session, comment out

diff --git a/MANIFEST.in b/MANIFEST.in
diff --git a/_debug.py b/_debug.py
diff --git a/core/hoc/Cell.hoc → neurodamus/data/hoc/Cell.hoc b/core/hoc/Cell.hoc → neurodamus/data/hoc/Cell.hoc
diff --git a/core/hoc/ConnectionUtils.hoc → neurodamus/data/hoc/ConnectionUtils.hoc b/core/hoc/ConnectionUtils.hoc → neurodamus/data/hoc/ConnectionUtils.hoc
diff --git a/core/hoc/Map.hoc → neurodamus/data/hoc/Map.hoc b/core/hoc/Map.hoc → neurodamus/data/hoc/Map.hoc
diff --git a/core/hoc/MorphIO.hoc → neurodamus/data/hoc/MorphIO.hoc b/core/hoc/MorphIO.hoc → neurodamus/data/hoc/MorphIO.hoc
diff --git a/core/hoc/RNGSettings.hoc → neurodamus/data/hoc/RNGSettings.hoc b/core/hoc/RNGSettings.hoc → neurodamus/data/hoc/RNGSettings.hoc
diff --git a/core/hoc/Report.hoc → neurodamus/data/hoc/Report.hoc b/core/hoc/Report.hoc → neurodamus/data/hoc/Report.hoc
diff --git a/core/hoc/TPointList.hoc → neurodamus/data/hoc/TPointList.hoc b/core/hoc/TPointList.hoc → neurodamus/data/hoc/TPointList.hoc
diff --git a/core/hoc/TType.hoc → neurodamus/data/hoc/TType.hoc b/core/hoc/TType.hoc → neurodamus/data/hoc/TType.hoc
diff --git a/core/hoc/defvar.hoc → neurodamus/data/hoc/defvar.hoc b/core/hoc/defvar.hoc → neurodamus/data/hoc/defvar.hoc
diff --git a/core/hoc/fileUtils.hoc → neurodamus/data/hoc/fileUtils.hoc b/core/hoc/fileUtils.hoc → neurodamus/data/hoc/fileUtils.hoc
diff --git a/core/hoc/neurodamus.hoc → neurodamus/data/hoc/neurodamus.hoc b/core/hoc/neurodamus.hoc → neurodamus/data/hoc/neurodamus.hoc
diff --git a/init.py → neurodamus/data/init.py b/init.py → neurodamus/data/init.py
diff --git a/core/mod/ALU.mod → neurodamus/data/mod/ALU.mod b/core/mod/ALU.mod → neurodamus/data/mod/ALU.mod
diff --git a/core/mod/CoreNEURONArtificialCell.mod → ...mus/data/mod/CoreNEURONArtificialCell.mod b/core/mod/CoreNEURONArtificialCell.mod → ...mus/data/mod/CoreNEURONArtificialCell.mod
diff --git a/core/mod/HDF5reader.mod → neurodamus/data/mod/HDF5reader.mod b/core/mod/HDF5reader.mod → neurodamus/data/mod/HDF5reader.mod
diff --git a/core/mod/SonataReportHelper.mod → neurodamus/data/mod/SonataReportHelper.mod b/core/mod/SonataReportHelper.mod → neurodamus/data/mod/SonataReportHelper.mod
diff --git a/core/mod/SonataReports.mod → neurodamus/data/mod/SonataReports.mod b/core/mod/SonataReports.mod → neurodamus/data/mod/SonataReports.mod
diff --git a/core/mod/VecStim.mod → neurodamus/data/mod/VecStim.mod b/core/mod/VecStim.mod → neurodamus/data/mod/VecStim.mod
diff --git a/core/mod/coreneuron_modlist.txt → neurodamus/data/mod/coreneuron_modlist.txt b/core/mod/coreneuron_modlist.txt → neurodamus/data/mod/coreneuron_modlist.txt
diff --git a/core/mod/netstim_inhpoisson.mod → neurodamus/data/mod/netstim_inhpoisson.mod b/core/mod/netstim_inhpoisson.mod → neurodamus/data/mod/netstim_inhpoisson.mod
diff --git a/pyproject.toml b/pyproject.toml
@@ -1,10 +1,9 @@
 [build-system]
 requires = [
-    "setuptools",
-    "setuptools_scm",
-    "wheel"
-    ]
-build-backend = "setuptools.build_meta"
+    "hatchling",
+    "hatch-vcs",
+]
+build-backend = "hatchling.build"
 
 [project]
 name="neurodamus"
@@ -36,10 +35,15 @@ Homepage = "https://github.com/BlueBrain/neurodamus"
 Repository = "https://github.com/BlueBrain/neurodamus.git"
 Tracker = "https://github.com/BlueBrain/neurodamus/issues"
 
-[tool.setuptools.packages.find]
-exclude=["tests"]
+[tool.hatch.build.targets.sdist]
+only-include = [
+    "neurodamus",
+]
+
+[tool.hatch.version]
+source = "vcs"
 
-[tool.setuptools_scm]
+[tool.hatch.version.raw-options]
 local_scheme = "no-local-version"
 
 [tool.pytest.ini_options]