Add label_to_binary tool

[kostrykin]

For the contributor:

• I have read the CONTRIBUTING.md document.
• License permits unrestricted use (educational + commercial).
• This PR adds or updates a tool or tool collection.
  • This PR adds a new tool or tool collection.
  • This PR updates an existing tool or tool collection.
  • Tools added/updated by this PR comply with the Naming and Annotation Conventions for Tools in the Image Community in Galaxy (or explain why they do not).
• This PR does something else (explain below).

---

Add label_to_binary tool (Convert label map to binary image), which is the counterpart of the binary2labelimage tool (Convert binary image to label map).

[kostrykin]

@bgruening Any idea what this error could be caused by?
https://github.com/BMCV/galaxy-image-analysis/actions/runs/8265712085/attempts/1#summary-22612634629

Job in error state.. tool_id: label_to_binary, exit_code: 1, stderr: Traceback (most recent call last):
File "/home/runner/work/galaxy-image-analysis/galaxy-image-analysis/tools/label_to_binary/label_to_binary.py", line 4, in
import skimage.io
File "/usr/local/lib/python3.9/site-packages/skimage/init.py", line 135, in
from .data import data_dir
File "/usr/local/lib/python3.9/site-packages/skimage/data/init.py", line 270, in
_init_pooch()
File "/usr/local/lib/python3.9/site-packages/skimage/data/init.py", line 255, in _init_pooch
os.makedirs(data_dir, exist_ok=True)
File "/usr/local/lib/python3.9/os.py", line 215, in makedirs
makedirs(head, exist_ok=exist_ok)
File "/usr/local/lib/python3.9/os.py", line 215, in makedirs
makedirs(head, exist_ok=exist_ok)
File "/usr/local/lib/python3.9/os.py", line 215, in makedirs
makedirs(head, exist_ok=exist_ok)
File "/usr/local/lib/python3.9/os.py", line 225, in makedirs
mkdir(name, mode)
PermissionError: [Errno 13] Permission denied: '/home/runner/.cache'

[bgruening]

No profile version ;)

[bgruening]

With a later profile we are providing a HOME dir that is for sure writeable per tool.

[kostrykin]

Oh, my bad! Thanks for clarification! Will remember that.