QuPath HRM extension

Welcome to the HRM extension for QuPath!

This adds support for sending images within a QuPath project to HRM server and retrieve them back to QuPath.

The extension is intended for QuPath v0.5.x (at the time of writing). It is not compatible with earlier QuPath versions.

Installing

Downloads

• To install the HRM extension, download the latest qupath-extension-biop-hrm-[version].jar file from releases drag the .jar onto the main QuPath window.

• If you haven't installed any extensions before, you'll be prompted to select a QuPath user directory. The extension will then be copied to a location inside that directory.

• The extension needs to have qupath-extension-biop-omero installed. Follow the installation steps provided for this extension. BE CAREFUL : Only versions v1.0.1 or higher are compatible with this extension.

Update

• You might then need to restart QuPath (but not your computer).

Building

You can build the extension using OpenJDK 17 or later with

gradlew clean build

The output will be under build/libs. You can drag the jar file on top of QuPath to install the extension.

Documentation

You can find all the documentation on how to use this extension on our wiki page.