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fix JRA55do inputs #123

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merged 6 commits into from
Sep 20, 2024
Merged

fix JRA55do inputs #123

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edcc96b
fix JRA55do runoff remapping bug https://github.com/COSIMA/access-om3…
aekiss Sep 16, 2024
e1e7e2d
update datm and drof streams to fix https://github.com/COSIMA/access-…
aekiss Sep 16, 2024
c146809
update input manifest for JRA55do mes https://github.com/COSIMA/acces…
aekiss Sep 16, 2024
0678324
change vk83/experiments to vk83/configurations
aekiss Sep 17, 2024
b673d26
update manifests/input.yaml to use /g/data/vk83/configurations instea…
aekiss Sep 20, 2024
230d026
use datamode=JRA55do - see https://github.com/COSIMA/access-om3/issue…
aekiss Sep 20, 2024
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27 changes: 14 additions & 13 deletions config.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -20,18 +20,19 @@ model: access-om3

exe: access-om3-MOM6-CICE6
input:
- /g/data/vk83/experiments/inputs/access-om3/share/meshes/global.1deg/2024.01.25/access-om2-1deg-ESMFmesh.nc
- /g/data/vk83/experiments/inputs/access-om3/share/meshes/global.1deg/2024.01.25/access-om2-1deg-nomask-ESMFmesh.nc
- /g/data/vk83/experiments/inputs/access-om3/share/meshes/share/2024.01.25/JRA55do-ESMFmesh.nc
- /g/data/vk83/experiments/inputs/access-om3/share/grids/global.1deg/2020.10.22/topog.nc
- /g/data/vk83/experiments/inputs/access-om3/mom/grids/mosaic/global.1deg/2020.05.30/ocean_hgrid.nc
- /g/data/vk83/experiments/inputs/access-om3/mom/grids/vertical/global.1deg/2023.07.28/ocean_vgrid.nc
- /g/data/vk83/experiments/inputs/access-om3/mom/initial_conditions/global.1deg/2020.10.22/ocean_temp_salt.res.nc
- /g/data/vk83/experiments/inputs/access-om3/mom/surface_salt_restoring/global.1deg/2020.05.30/salt_sfc_restore.nc
- /g/data/vk83/experiments/inputs/access-om3/cice/grids/global.1deg/2024.05.14/grid.nc
- /g/data/vk83/experiments/inputs/access-om3/cice/grids/global.1deg/2024.05.14/kmt.nc
- /g/data/vk83/experiments/inputs/access-om3/cice/initial_conditions/global.1deg/2023.07.28/iced.1900-01-01-10800.nc
- /g/data/vk83/experiments/inputs/JRA-55/RYF/v1-4/data
- /g/data/vk83/configurations/inputs/access-om3/share/meshes/global.1deg/2024.01.25/access-om2-1deg-ESMFmesh.nc
- /g/data/vk83/configurations/inputs/access-om3/share/meshes/global.1deg/2024.01.25/access-om2-1deg-nomask-ESMFmesh.nc
- /g/data/vk83/configurations/inputs/access-om3/share/meshes/share/2024.09.16/JRA55do-datm-ESMFmesh.nc
- /g/data/vk83/configurations/inputs/access-om3/share/meshes/share/2024.09.16/JRA55do-drof-ESMFmesh.nc
- /g/data/vk83/configurations/inputs/access-om3/share/grids/global.1deg/2020.10.22/topog.nc
- /g/data/vk83/configurations/inputs/access-om3/mom/grids/mosaic/global.1deg/2020.05.30/ocean_hgrid.nc
- /g/data/vk83/configurations/inputs/access-om3/mom/grids/vertical/global.1deg/2023.07.28/ocean_vgrid.nc
- /g/data/vk83/configurations/inputs/access-om3/mom/initial_conditions/global.1deg/2020.10.22/ocean_temp_salt.res.nc
- /g/data/vk83/configurations/inputs/access-om3/mom/surface_salt_restoring/global.1deg/2020.05.30/salt_sfc_restore.nc
- /g/data/vk83/configurations/inputs/access-om3/cice/grids/global.1deg/2024.05.14/grid.nc
- /g/data/vk83/configurations/inputs/access-om3/cice/grids/global.1deg/2024.05.14/kmt.nc
- /g/data/vk83/configurations/inputs/access-om3/cice/initial_conditions/global.1deg/2023.07.28/iced.1900-01-01-10800.nc
- /g/data/vk83/configurations/inputs/JRA-55/RYF/v1-4/data

collate: false
runlog: false
Expand All @@ -47,5 +48,5 @@ modules:
- /g/data/ik11/spack/0.21.2/modules/access-om3/0.x.0/linux-rocky8-cascadelake
- /g/data/hh5/public/modules
load:
- access-om3/63ed4a4777aeac0c62720ddbe7f85e4ed16f82eb_main
- access-om3/96f91599f746b4866bbd3f05ee6eb192ba70d391_main
- conda/analysis3-24.01
334 changes: 162 additions & 172 deletions datm.streams.xml
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Original file line number Diff line number Diff line change
@@ -1,198 +1,188 @@
<?xml version="1.0"?>
<?xml version="1.0" ?>
<file id="stream" version="2.0">

<stream_info name="CORE_IAF_JRA55do.PRSN">
<taxmode>cycle</taxmode>
<tintalgo>linear</tintalgo>
<readmode>single</readmode>
<mapalgo>bilinear</mapalgo>
<dtlimit>1.5</dtlimit>
<year_first>1900</year_first>
<year_last>1900</year_last>
<year_align>1900</year_align>
<vectors>null</vectors>
<meshfile>./INPUT/JRA55do-ESMFmesh.nc</meshfile>
<lev_dimname>null</lev_dimname>
<datafiles>
<metadata>
<File_type>DATM xml file provides forcing data</File_type>
<date_generated>2024-09-16 13:44:43</date_generated>
<history>Created by aek156 (Andrew Kiss) on 2024-09-16, using https://github.com/COSIMA/om3-scripts/blob/b4048fd0d3230112c9572d1ad5bb5120e7ddeee9/data_stream_xml_generation/generate_xml_datm.py: /g/data/vk83/apps/om3-scripts/data_stream_xml_generation/generate_xml_datm.py 1900 1900</history>
</metadata>
<stream_info name="JRA55do.PRSN">
<taxmode>cycle</taxmode>
<readmode>single</readmode>
<mapalgo>bilinear</mapalgo>
<dtlimit>1.5</dtlimit>
<year_first>1900</year_first>
<year_last>1900</year_last>
<year_align>1900</year_align>
<vectors>null</vectors>
<meshfile>./INPUT/JRA55do-datm-ESMFmesh.nc</meshfile>
<lev_dimname>null</lev_dimname>
<datafiles>
<file>./INPUT/RYF.prsn.1990_1991.nc</file>
</datafiles>
<datavars>
</datafiles>
<datavars>
<var>prsn Faxa_prsn</var>
</datavars>
<offset>0</offset>
</datavars>
<offset>0</offset>
<tintalgo>linear</tintalgo>
</stream_info>

<stream_info name="CORE_IAF_JRA55do.PRRN">
<taxmode>cycle</taxmode>
<tintalgo>linear</tintalgo>
<readmode>single</readmode>
<mapalgo>bilinear</mapalgo>
<dtlimit>1.5</dtlimit>
<year_first>1900</year_first>
<year_last>1900</year_last>
<year_align>1900</year_align>
<vectors>null</vectors>
<meshfile>./INPUT/JRA55do-ESMFmesh.nc</meshfile>
<lev_dimname>null</lev_dimname>
<datafiles>
<stream_info name="JRA55do.PRRN">
<taxmode>cycle</taxmode>
<readmode>single</readmode>
<mapalgo>bilinear</mapalgo>
<dtlimit>1.5</dtlimit>
<year_first>1900</year_first>
<year_last>1900</year_last>
<year_align>1900</year_align>
<vectors>null</vectors>
<meshfile>./INPUT/JRA55do-datm-ESMFmesh.nc</meshfile>
<lev_dimname>null</lev_dimname>
<datafiles>
<file>./INPUT/RYF.prra.1990_1991.nc</file>
</datafiles>
<datavars>
</datafiles>
<datavars>
<var>prra Faxa_prrn</var>
</datavars>
<offset>0</offset>
</datavars>
<offset>0</offset>
<tintalgo>linear</tintalgo>
</stream_info>

<stream_info name="CORE_IAF_JRA55do.LWDN">
<taxmode>cycle</taxmode>
<tintalgo>linear</tintalgo>
<readmode>single</readmode>
<mapalgo>bilinear</mapalgo>
<dtlimit>1.5</dtlimit>
<year_first>1900</year_first>
<year_last>1900</year_last>
<year_align>1900</year_align>
<vectors>null</vectors>
<meshfile>./INPUT/JRA55do-ESMFmesh.nc</meshfile>
<lev_dimname>null</lev_dimname>
<datafiles>
<stream_info name="JRA55do.LWDN">
<taxmode>cycle</taxmode>
<readmode>single</readmode>
<mapalgo>bilinear</mapalgo>
<dtlimit>1.5</dtlimit>
<year_first>1900</year_first>
<year_last>1900</year_last>
<year_align>1900</year_align>
<vectors>null</vectors>
<meshfile>./INPUT/JRA55do-datm-ESMFmesh.nc</meshfile>
<lev_dimname>null</lev_dimname>
<datafiles>
<file>./INPUT/RYF.rlds.1990_1991.nc</file>
</datafiles>
<datavars>
</datafiles>
<datavars>
<var>rlds Faxa_lwdn</var>
</datavars>
<offset>0</offset>
</datavars>
<offset>0</offset>
<tintalgo>linear</tintalgo>
</stream_info>


<stream_info name="CORE_IAF_JRA55do.SWDN">
<taxmode>cycle</taxmode>
<tintalgo>coszen</tintalgo>
<readmode>single</readmode>
<mapalgo>bilinear</mapalgo>
<dtlimit>1.5</dtlimit>
<year_first>1900</year_first>
<year_last>1900</year_last>
<year_align>1900</year_align>
<vectors>null</vectors>
<meshfile>./INPUT/JRA55do-ESMFmesh.nc</meshfile>
<lev_dimname>null</lev_dimname>
<datafiles>
<stream_info name="JRA55do.SWDN">
<taxmode>cycle</taxmode>
<readmode>single</readmode>
<mapalgo>bilinear</mapalgo>
<dtlimit>1.5</dtlimit>
<year_first>1900</year_first>
<year_last>1900</year_last>
<year_align>1900</year_align>
<vectors>null</vectors>
<meshfile>./INPUT/JRA55do-datm-ESMFmesh.nc</meshfile>
<lev_dimname>null</lev_dimname>
<datafiles>
<file>./INPUT/RYF.rsds.1990_1991.nc</file>
</datafiles>
<datavars>
</datafiles>
<datavars>
<var>rsds Faxa_swdn</var>
</datavars>
<offset>0</offset>
</datavars>
<offset>0</offset>
<tintalgo>coszen</tintalgo>
</stream_info>


<stream_info name="CORE_IAF_JRA55do.Q_10">
<taxmode>cycle</taxmode>
<tintalgo>linear</tintalgo>
<readmode>single</readmode>
<mapalgo>bilinear</mapalgo>
<dtlimit>1.5</dtlimit>
<year_first>1900</year_first>
<year_last>1900</year_last>
<year_align>1900</year_align>
<vectors>null</vectors>
<meshfile>./INPUT/JRA55do-ESMFmesh.nc</meshfile>
<lev_dimname>null</lev_dimname>
<datafiles>
<stream_info name="JRA55do.Q_10">
<taxmode>cycle</taxmode>
<readmode>single</readmode>
<mapalgo>bilinear</mapalgo>
<dtlimit>1.5</dtlimit>
<year_first>1900</year_first>
<year_last>1900</year_last>
<year_align>1900</year_align>
<vectors>null</vectors>
<meshfile>./INPUT/JRA55do-datm-ESMFmesh.nc</meshfile>
<lev_dimname>null</lev_dimname>
<datafiles>
<file>./INPUT/RYF.huss.1990_1991.nc</file>
</datafiles>
<datavars>
</datafiles>
<datavars>
<var>huss Sa_shum</var>
</datavars>
<offset>0</offset>
</datavars>
<offset>0</offset>
<tintalgo>linear</tintalgo>
</stream_info>


<stream_info name="CORE_IAF_JRA55do.SLP_10">
<taxmode>cycle</taxmode>
<tintalgo>linear</tintalgo>
<readmode>single</readmode>
<mapalgo>bilinear</mapalgo>
<dtlimit>1.5</dtlimit>
<year_first>1900</year_first>
<year_last>1900</year_last>
<year_align>1900</year_align>
<vectors>null</vectors>
<meshfile>./INPUT/JRA55do-ESMFmesh.nc</meshfile>
<lev_dimname>null</lev_dimname>
<datafiles>
<stream_info name="JRA55do.SLP_10">
<taxmode>cycle</taxmode>
<readmode>single</readmode>
<mapalgo>bilinear</mapalgo>
<dtlimit>1.5</dtlimit>
<year_first>1900</year_first>
<year_last>1900</year_last>
<year_align>1900</year_align>
<vectors>null</vectors>
<meshfile>./INPUT/JRA55do-datm-ESMFmesh.nc</meshfile>
<lev_dimname>null</lev_dimname>
<datafiles>
<file>./INPUT/RYF.psl.1990_1991.nc</file>
</datafiles>
<datavars>
</datafiles>
<datavars>
<var>psl Sa_pslv</var>
</datavars>
<offset>0</offset>
</datavars>
<offset>0</offset>
<tintalgo>linear</tintalgo>
</stream_info>


<stream_info name="CORE_IAF_JRA55do.T_10">
<taxmode>cycle</taxmode>
<tintalgo>linear</tintalgo>
<readmode>single</readmode>
<mapalgo>bilinear</mapalgo>
<dtlimit>1.5</dtlimit>
<year_first>1900</year_first>
<year_last>1900</year_last>
<year_align>1900</year_align>
<vectors>null</vectors>
<meshfile>./INPUT/JRA55do-ESMFmesh.nc</meshfile>
<lev_dimname>null</lev_dimname>
<datafiles>
<stream_info name="JRA55do.T_10">
<taxmode>cycle</taxmode>
<readmode>single</readmode>
<mapalgo>bilinear</mapalgo>
<dtlimit>1.5</dtlimit>
<year_first>1900</year_first>
<year_last>1900</year_last>
<year_align>1900</year_align>
<vectors>null</vectors>
<meshfile>./INPUT/JRA55do-datm-ESMFmesh.nc</meshfile>
<lev_dimname>null</lev_dimname>
<datafiles>
<file>./INPUT/RYF.tas.1990_1991.nc</file>
</datafiles>
<datavars>
<var>tas Sa_tbot</var>
</datavars>
<offset>0</offset>
</datafiles>
<datavars>
<var>tas Sa_tbot</var>
</datavars>
<offset>0</offset>
<tintalgo>linear</tintalgo>
</stream_info>


<stream_info name="CORE_IAF_JRA55do.U_10">
<taxmode>cycle</taxmode>
<tintalgo>linear</tintalgo>
<readmode>single</readmode>
<mapalgo>bilinear</mapalgo>
<dtlimit>1.5</dtlimit>
<year_first>1900</year_first>
<year_last>1900</year_last>
<year_align>1900</year_align>
<vectors>null</vectors>
<meshfile>./INPUT/JRA55do-ESMFmesh.nc</meshfile>
<lev_dimname>null</lev_dimname>
<datafiles>
<stream_info name="JRA55do.U_10">
<taxmode>cycle</taxmode>
<readmode>single</readmode>
<mapalgo>bilinear</mapalgo>
<dtlimit>1.5</dtlimit>
<year_first>1900</year_first>
<year_last>1900</year_last>
<year_align>1900</year_align>
<vectors>null</vectors>
<meshfile>./INPUT/JRA55do-datm-ESMFmesh.nc</meshfile>
<lev_dimname>null</lev_dimname>
<datafiles>
<file>./INPUT/RYF.uas.1990_1991.nc</file>
</datafiles>
<datavars>
<var>uas Sa_u</var>
</datavars>
<offset>0</offset>
</datafiles>
<datavars>
<var>uas Sa_u</var>
</datavars>
<offset>0</offset>
<tintalgo>linear</tintalgo>
</stream_info>


<stream_info name="CORE_IAF_JRA55do.V_10">
<taxmode>cycle</taxmode>
<tintalgo>linear</tintalgo>
<readmode>single</readmode>
<mapalgo>bilinear</mapalgo>
<dtlimit>1.5</dtlimit>
<year_first>1900</year_first>
<year_last>1900</year_last>
<year_align>1900</year_align>
<vectors>null</vectors>
<meshfile>./INPUT/JRA55do-ESMFmesh.nc</meshfile>
<lev_dimname>null</lev_dimname>
<datafiles>
<stream_info name="JRA55do.V_10">
<taxmode>cycle</taxmode>
<readmode>single</readmode>
<mapalgo>bilinear</mapalgo>
<dtlimit>1.5</dtlimit>
<year_first>1900</year_first>
<year_last>1900</year_last>
<year_align>1900</year_align>
<vectors>null</vectors>
<meshfile>./INPUT/JRA55do-datm-ESMFmesh.nc</meshfile>
<lev_dimname>null</lev_dimname>
<datafiles>
<file>./INPUT/RYF.vas.1990_1991.nc</file>
</datafiles>
<datavars>
<var>vas Sa_v</var>
</datavars>
<offset>0</offset>
</datafiles>
<datavars>
<var>vas Sa_v</var>
</datavars>
<offset>0</offset>
<tintalgo>linear</tintalgo>
</stream_info>
</file>
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