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Scripts and data used in the benchmarking study of Twist Ancient Human DNA enrichment by Davidson et al. 2024

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Davidson et al 2024 - Twist capture benchmark

Scripts and data used in the benchmarking study of Twist Ancient Human DNA enrichment by Davidson et al. 2024

eager.sh is the nf-core/eager script used to process the sequencing data
Table_S1.csv contains the sequencing statistics per library required to plot efficacy and cost/benefit figures
bcl2fastq.sh was used to demultiplex
f4_plot.R was used to plot the results of f4 statistics
efficacy_plots.R was used to plot Figures 2, 3, 4, 6, S1 & S2
qpDstat_f4.sh was used to run f4 statistics
index_hopping_stats2.tsv contains the count data used to analyse index hopping rate
plot_index_hopping.R was used to plot index hopping figures

Links

bioRxiv preprint

Interactive cost-benefit plot here

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Scripts and data used in the benchmarking study of Twist Ancient Human DNA enrichment by Davidson et al. 2024

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