cloud-config-jbrowse-dev.yaml

#cloud-config
 
# Instance

bootcmd:
- sysctl "vm.swappiness=0"
- cloud-init-per once unmount-mnt umount /mnt
- cloud-init-per once mkswap-volume mkswap /dev/xvdb
- cloud-init-per once enable-swapon swapon /dev/xvdb
- cloud-init-per once mkdir-data mkdir /data
- cloud-init-per once mkfs-data mkfs.ext4 /dev/xvdc
- cloud-init-per once mount-data mount /dev/xvdc /data

mounts:
- [ /dev/xvdb ]
- [ /dev/xvdc, /data, "auto", "defaults", "0", "0" ]

package_update: true

package_upgrade: true

packages:
- apache2
- awscli
- emacs
- git
- unzip
- build-essential
- libgd2-noxpm-dev
- php5-gd
- libpng-dev
- zlib1g-dev
- make
- openjdk-7-jdk
- subversion
- rsync

power_state:
  mode: reboot

runcmd:
- sudo addgroup --gid 674 bradmin
- sudo adduser --uid 3481 --gid 674 --gecos "JBrowse User" --home /home/kkarra --shell /bin/bash --disabled-password kkarra
- sudo chown kkarra:bradmin /home/kkarra
- sudo chown -R kkarra:bradmin /home/kkarra/.ssh
- sudo chmod 0700 /home/kkarra/.ssh

- sudo chmod g+w /var/www/html
- cd /var/www/html/
- curl -O http://jbrowse.org/releases/JBrowse-1.12.0.zip
- unzip JBrowse-1.12.0.zip
- ln -s JBrowse-1.12.0/ jbrowse
- cd JBrowse-1.12.0/
- sudo chgrp -R bradmin /var/www/html
- sudo chown -R kkarra /var/www/html
- ./setup.sh
- wget http://downloads.yeastgenome.org/sequence/S288C_reference/genome_releases/S288C_reference_genome_Current_Release.tgz
- gunzip S288C_reference_genome_Current_Release.tgz
- tar -xvf S288C_reference_genome_Current_Release.tar

write_files:

- path: /home/kkarra/.ssh/authorized_keys
  owner: kkarra:bradmin
  permissions: '0600'
  content: |
    ssh-rsa AAAAB3NzaC1yc2EAAAADAQABAAABAQCWBJZnICfdc1u1/0lX68ojjZymA1fLfHaasRxsZX5K+IrU7617MlFDwyVTJ8Rku1czpg6uSPfB2m84M8ilxPBd3bQs/GLZ1Fn/BQ2ZwuZSbR2eB7UD0ag4p7KHqB5bXhP5DyMVLKFq31Q3m5Oc3iddeGImXyeNHmvMRBiL4Jt6A3KY4k1pGtCVARz9ndOFI4dMMX2WbLfY5PhnE1zAIMFaWeBMA1aQfshX23EYlXHLZHSJT/A9GPUsTokZT5lJIkxEezf4zXpcQSWXo1/3UIRh//NkzItJ+jSaeARpf5INcRG1N6m6EOCV7AjPk/k3m1MmoXXZ2Ow76JprF+jILijz

timezone: US/Pacific