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README.Rmd
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README.Rmd
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---
title: "Imprinting"
author: "Victor Yuan"
date: "19/12/2019"
output:
md_document:
df_print: kable
always_allow_html: yes
editor_options:
chunk_output_type: console
---
This is a combined resource of 5 publications that looked at human imprinting:
|Publication| Tissue-specificity|
|---|---|
| Court et al. 2014| Placental + Other|
| Hanna et al. 2016| Placental + Other|
| Sanchez-Delgado et al. 2016| Placental|
| Hamada et al. 2016| Placental|
| Zink et al. 2018| Other|
These regions can be found in @ `processed/all_imprinted_dmrs.tsv`
Here is a view of the first 6 rows:
```{r echo = FALSE, message = FALSE, warning = FALSE}
library(tidyverse)
library(inspectdf)
library(kableExtra)
dmrs <- read_tsv(here::here('processed', 'all_imprinted_dmrs.tsv'))
head(dmrs)
```
There are in total 418 imprinted regions, which can be divided into those that are specific to the placenta, and those that have been observed in other tissues.
```{r echo = FALSE}
dmrs %>%
count(tissue_specificity)
```