forked from Coastal-Imaging-Research-Network/cBathy-Toolbox
-
Notifications
You must be signed in to change notification settings - Fork 0
/
cBathyBatch.m
87 lines (74 loc) · 3.26 KB
/
cBathyBatch.m
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
function cBathyBatch(stationStr, year, JulianDays)
%
% cBathyBatch(stationStr, year, JulianDay)
% Batch control for the BWLite program. This routine runs Beach
% Wizard for a set of files, plotting output as requested by the user
% and saving data products in a specified folder. This routine calls
% analyseBathyCollect which loads the stack and controls the analysis
% using on a tile by tile basis.
% stationStr is the short station name. The analysis will be done for
% the specified year and Julian day.
% written by Holman, 06/09 following pioneering work by Nathaniel
% Plant.
% connect to the DB and set paths
DBConnect;
BWSaveCollectPath = ['/home/ruby/users/holman/research/BEACHWIZARD/BATHYRESULTS/' ...
stationStr '/COLLECTIONRESULTS/'];
addpath(strrep(which('cBathyBatch'), 'cBathyBatch.m', 'SETTINGS'));
% set the parameters for analysis.
eval(stationStr) % edit this m-file to change params
% begin the analysis loop. Get the stack names for this day
camStr = ['c' num2str(params.defaultKeyCam, '%.0f')];
for day = JulianDays
dirStr = ['/ftp/pub/' stationStr '/' num2str(year) '/' ...
camStr '/' num2str(day) '*'];
dayStr = dir(dirStr);
dirStr = ['/ftp/pub/' stationStr '/' num2str(year) '/' ...
camStr '/' dayStr.name '/*stack*'];
nms = dir(dirStr);
fprintf('\n\nAnalyzing %2d stacks from date %s\n\n', length(nms), dayStr.name)
% loop through, saving output to disk
tic
for i = 1: length(nms)
sName = nms(i).name;
n = parseFilename(sName);
clear bathy % store all here, clear first
bathy.epoch = n.time; bathy.sName = sName; bathy.params = params;
[xyz, epoch, data, cam] = loadBathyStack(bathy.sName, bathy.params.DECIMATE);
bathy = analyzeBathyCollect(xyz, epoch, data, cam, bathy);
if ~isempty(bathy)
plotBathyCollectSDS(bathy);
saveStr = [n.time n.station]
eval(['save ' BWSaveCollectPath saveStr ' bathy'])
else
warning(['No data returned for stack ' sName])
end
end
end
TOTALANALYSISTIME = toc
% to do
% - get tide for kalman filtering elevations (not depths)
% - improve the plotting stuff - options, meaningful plots, etc.
% - improve front end batch stuff. How to I want to call this? By
% the day? By station, etc.
% - check out the nlparceci errors - why are they happening?
return
%
% Copyright (C) 2017 Coastal Imaging Research Network
% and Oregon State University
% This program is free software: you can redistribute it and/or
% modify it under the terms of the GNU General Public License as
% published by the Free Software Foundation, version 3 of the
% License.
% This program is distributed in the hope that it will be useful,
% but WITHOUT ANY WARRANTY; without even the implied warranty of
% MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
% GNU General Public License for more details.
% You should have received a copy of the GNU General Public License
% along with this program. If not, see
% <http://www.gnu.org/licenses/>.
% CIRN: https://coastal-imaging-research-network.github.io/
% CIL: http://cil-www.coas.oregonstate.edu
%
%key cBathy
%