diff --git a/.gitignore b/.gitignore index 4a76c3a3e..c760e0ad2 100644 --- a/.gitignore +++ b/.gitignore @@ -102,7 +102,6 @@ ENV/ .mypy_cache/ # jwt keys -keys tests/resources/keys/*.pem .DS_Store diff --git a/.secrets.baseline b/.secrets.baseline index 82a2c6b2a..469ed8bfc 100644 --- a/.secrets.baseline +++ b/.secrets.baseline @@ -115,13 +115,13 @@ } ], "results": { - ".github/workflows/ci.yaml": [ + ".github/workflows/buildpipeline.yaml": [ { "type": "Secret Keyword", - "filename": ".github/workflows/ci.yaml", + "filename": ".github/workflows/buildpipeline.yaml", "hashed_secret": "3e26d6750975d678acb8fa35a0f69237881576b0", "is_verified": false, - "line_number": 13 + "line_number": 17 } ], "deployment/scripts/postgresql/postgresql_init.sql": [ @@ -210,22 +210,13 @@ "line_number": 137 } ], - "fence/resources/storage/storageclient/cleversafe.py": [ - { - "type": "Secret Keyword", - "filename": "fence/resources/storage/storageclient/cleversafe.py", - "hashed_secret": "7cb6efb98ba5972a9b5090dc2e517fe14d12cb04", - "is_verified": false, - "line_number": 274 - } - ], "fence/utils.py": [ { "type": "Secret Keyword", "filename": "fence/utils.py", "hashed_secret": "8318df9ecda039deac9868adf1944a29a95c7114", "is_verified": false, - "line_number": 129 + "line_number": 128 } ], "migrations/versions/a04a70296688_non_unique_client_name.py": [ @@ -268,14 +259,14 @@ "filename": "tests/conftest.py", "hashed_secret": "1348b145fa1a555461c1b790a2f66614781091e9", "is_verified": false, - "line_number": 1570 + "line_number": 1556 }, { "type": "Base64 High Entropy String", "filename": "tests/conftest.py", "hashed_secret": "227dea087477346785aefd575f91dd13ab86c108", "is_verified": false, - "line_number": 1594 + "line_number": 1579 } ], "tests/credentials/google/test_credentials.py": [ @@ -394,24 +385,6 @@ "line_number": 300 } ], - "tests/storageclient/storage_client_mock.py": [ - { - "type": "Secret Keyword", - "filename": "tests/storageclient/storage_client_mock.py", - "hashed_secret": "37bbea9557f9efd1eeadb25dda9ab6514f08fde9", - "is_verified": false, - "line_number": 158 - } - ], - "tests/storageclient/test_cleversafe_api_client.py": [ - { - "type": "Secret Keyword", - "filename": "tests/storageclient/test_cleversafe_api_client.py", - "hashed_secret": "f683c485d521c2e45830146dd570111770baea29", - "is_verified": false, - "line_number": 130 - } - ], "tests/test-fence-config.yaml": [ { "type": "Basic Auth Credentials", @@ -422,5 +395,5 @@ } ] }, - "generated_at": "2024-08-22T19:43:39Z" + "generated_at": "2023-10-20T20:37:17Z" } diff --git a/Dockerfile b/Dockerfile index f103e44f9..ed075b26d 100644 --- a/Dockerfile +++ b/Dockerfile @@ -1,56 +1,86 @@ -# To run: docker run --rm -d -v /path/to/fence-config.yaml:/var/www/fence/fence-config.yaml --name=fence -p 80:80 fence -# To check running container do: docker exec -it fence /bin/bash +ARG AZLINUX_BASE_VERSION=master -FROM quay.io/cdis/python:python3.9-buster-2.0.0 +# Base stage with python-build-base +FROM quay.io/cdis/python-build-base:${AZLINUX_BASE_VERSION} as base + +# Comment this in, and comment out the line above, if quay is down +# FROM 707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/python-build-base:${AZLINUX_BASE_VERSION} as base ENV appname=fence +ENV POETRY_NO_INTERACTION=1 \ + POETRY_VIRTUALENVS_IN_PROJECT=1 \ + POETRY_VIRTUALENVS_CREATE=1 + +WORKDIR /${appname} + +# create gen3 user +# Create a group 'gen3' with GID 1000 and a user 'gen3' with UID 1000 +RUN groupadd -g 1000 gen3 && \ + useradd -m -s /bin/bash -u 1000 -g gen3 gen3 && \ + chown -R gen3:gen3 /$appname && \ + mkdir -p /var/www/$appname && \ + chown -R gen3:gen3 /var/www/$appname && \ + chown -R gen3:gen3 /venv + + +# Builder stage +FROM base as builder + +USER gen3 + + +RUN python -m venv /venv + + +COPY poetry.lock pyproject.toml /${appname}/ + +RUN pip install poetry && \ + poetry install -vv --only main --no-interaction + +COPY --chown=gen3:gen3 . /$appname +COPY --chown=gen3:gen3 ./deployment/wsgi/wsgi.py /$appname/wsgi.py + +# Run poetry again so this app itself gets installed too +RUN poetry install --without dev --no-interaction + +RUN git config --global --add safe.directory /${appname} && COMMIT=`git rev-parse HEAD` && echo "COMMIT=\"${COMMIT}\"" > /$appname/version_data.py \ + && VERSION=`git describe --always --tags` && echo "VERSION=\"${VERSION}\"" >> /$appname/version_data.py + +# Final stage +FROM base + +COPY --from=builder /venv /venv +COPY --from=builder /$appname /$appname + +# install tar +RUN yum install tar -y + +# install nginx +RUN yum install nginx -y + +RUN setcap 'cap_net_bind_service=+ep' /usr/sbin/nginx + +# chown nginx directories +RUN chown -R gen3:gen3 /var/log/nginx + +# pipe nginx logs to stdout and stderr +RUN ln -sf /dev/stdout /var/log/nginx/access.log && ln -sf /dev/stderr /var/log/nginx/error.log + +# create /var/lib/nginx/tmp/client_body to allow nginx to write to fence +RUN mkdir -p /var/lib/nginx/tmp/client_body +RUN chown -R gen3:gen3 /var/lib/nginx/ + +# copy nginx config +COPY ./deployment/nginx/nginx.conf /etc/nginx/nginx.conf + + +# Switch to non-root user 'gen3' for the serving process +USER gen3 + +RUN source /venv/bin/activate + +ENV PYTHONUNBUFFERED=1 \ +PYTHONIOENCODING=UTF-8 + -RUN pip install --upgrade pip -RUN pip install --upgrade poetry -RUN apt-get update \ - && apt-get install -y --no-install-recommends curl bash git \ - && apt-get -y install vim \ - libmcrypt4 mcrypt \ - && apt-get clean \ - && rm -rf /var/lib/apt/lists/ - -RUN mkdir -p /var/www/$appname \ - && mkdir -p /var/www/.cache/Python-Eggs/ \ - && mkdir /run/nginx/ \ - && ln -sf /dev/stdout /var/log/nginx/access.log \ - && ln -sf /dev/stderr /var/log/nginx/error.log \ - && chown nginx -R /var/www/.cache/Python-Eggs/ \ - && chown nginx /var/www/$appname - -# aws cli v2 - needed for storing files in s3 during usersync k8s job -RUN curl "https://awscli.amazonaws.com/awscli-exe-linux-x86_64.zip" -o "awscliv2.zip" \ - && unzip awscliv2.zip \ - && ./aws/install \ - && /bin/rm -rf awscliv2.zip ./aws - -WORKDIR /$appname - -# copy ONLY poetry artifact, install the dependencies but not fence -# this will make sure than the dependencies is cached -COPY poetry.lock pyproject.toml /$appname/ -RUN poetry config virtualenvs.create false \ - && poetry install -vv --no-root --no-dev --no-interaction \ - && poetry show -v - -# copy source code ONLY after installing dependencies -COPY . /$appname -COPY ./deployment/uwsgi/uwsgi.ini /etc/uwsgi/uwsgi.ini -COPY ./deployment/uwsgi/wsgi.py /$appname/wsgi.py -COPY clear_prometheus_multiproc /$appname/clear_prometheus_multiproc - -# install fence -RUN poetry config virtualenvs.create false \ - && poetry install -vv --no-dev --no-interaction \ - && poetry show -v - -RUN COMMIT=`git rev-parse HEAD` && echo "COMMIT=\"${COMMIT}\"" >$appname/version_data.py \ - && VERSION=`git describe --always --tags` && echo "VERSION=\"${VERSION}\"" >>$appname/version_data.py - -WORKDIR /var/www/$appname - -CMD ["sh","-c","bash /fence/dockerrun.bash && /dockerrun.sh"] +CMD ["/bin/bash", "-c", "/fence/dockerrun.bash"] diff --git a/deployment/nginx/nginx.conf b/deployment/nginx/nginx.conf new file mode 100644 index 000000000..c64485a90 --- /dev/null +++ b/deployment/nginx/nginx.conf @@ -0,0 +1,44 @@ +user gen3; +worker_processes auto; +error_log /var/log/nginx/error.log notice; +pid /var/lib/nginx/nginx.pid; + +# Load dynamic modules. See /usr/share/doc/nginx/README.dynamic. +include /usr/share/nginx/modules/*.conf; + +events { + worker_connections 1024; +} + +http { + log_format main '$remote_addr - $remote_user [$time_local] "$request" ' + '$status $body_bytes_sent "$http_referer" ' + '"$http_user_agent" "$http_x_forwarded_for"'; + + access_log /var/log/nginx/access.log main; + + sendfile on; + tcp_nopush on; + keepalive_timeout 65; + types_hash_max_size 4096; + + include /etc/nginx/mime.types; + default_type application/octet-stream; + + # Load modular configuration files from the /etc/nginx/conf.d directory. + # See http://nginx.org/en/docs/ngx_core_module.html#include + # for more information. + include /etc/nginx/conf.d/*.conf; + + server { + + listen 80; + server_name localhost; + + location / { + proxy_pass http://127.0.0.1:8000; + proxy_set_header Host $host; + proxy_set_header X-Forwarded-For $proxy_add_x_forwarded_for; + } + } +} diff --git a/deployment/uwsgi/uwsgi.ini b/deployment/uwsgi/uwsgi.ini deleted file mode 100644 index 0ebedb7ce..000000000 --- a/deployment/uwsgi/uwsgi.ini +++ /dev/null @@ -1,37 +0,0 @@ -[uwsgi] -protocol = uwsgi -socket = /var/run/gen3/uwsgi.sock -buffer-size = 32768 -uid = nginx -gid = nginx -chown-socket = nginx:nginx -chmod-socket = 666 -master = true -harakiri-verbose = true -# No global HARAKIRI, using only user HARAKIRI, because export overwrites it -# Cannot overwrite global HARAKIRI with user's: https://git.io/fjYuD -# harakiri = 45 -http-timeout = 45 -socket-timeout = 45 -worker-reload-mercy = 45 -reload-mercy = 45 -mule-reload-mercy = 45 -disable-logging = true -wsgi-file=/fence/wsgi.py -plugins = python3 -vacuum = true -pythonpath = /var/www/fence/ -pythonpath = /fence/ -# poetry installs git dependencies at /usr/local/src -pythonpath = /usr/local/src/* - -# metrics setup -stats = 127.0.0.1:9191 -stats-http = true -env = prometheus_multiproc_dir=/var/tmp/uwsgi_flask_metrics -exec-asap = /fence/clear_prometheus_multiproc /var/tmp/uwsgi_flask_metrics - -# Initialize application in worker processes, not master. This prevents the -# workers from all trying to open the same database connections at startup. -lazy = true -lazy-apps = true diff --git a/deployment/wsgi/gunicorn.conf.py b/deployment/wsgi/gunicorn.conf.py new file mode 100644 index 000000000..1eaa94a1e --- /dev/null +++ b/deployment/wsgi/gunicorn.conf.py @@ -0,0 +1,9 @@ +wsgi_app = "deployment.wsgi.wsgi:application" +bind = "0.0.0.0:8000" +workers = 4 +preload_app = True +user = "gen3" +group = "gen3" +timeout = 300 +keepalive = 2 +keepalive_timeout = 5 diff --git a/deployment/uwsgi/wsgi.py b/deployment/wsgi/wsgi.py similarity index 100% rename from deployment/uwsgi/wsgi.py rename to deployment/wsgi/wsgi.py diff --git a/dockerrun.bash b/dockerrun.bash index ce7150731..9c9a67313 100755 --- a/dockerrun.bash +++ b/dockerrun.bash @@ -4,7 +4,7 @@ # Update certificate authority index - # environment may have mounted more authorities # -update-ca-certificates +# update-ca-certificates # # Kubernetes may mount jwt-keys as a tar ball # @@ -15,6 +15,9 @@ if [ -f /fence/jwt-keys.tar ]; then if [ -d jwt-keys ]; then mkdir -p keys mv jwt-keys/* keys/ + rm -rf /fence/keys/key/ fi ) fi +nginx +gunicorn -c /fence/deployment/wsgi/gunicorn.conf.py diff --git a/fence/jwt/keys.py b/fence/jwt/keys.py index d08e9d5f0..f423362fb 100644 --- a/fence/jwt/keys.py +++ b/fence/jwt/keys.py @@ -148,13 +148,26 @@ def from_directory(cls, keys_dir, naming_function=None): prv_filepath = os.path.join(keys_dir, "jwt_private_key.pem") if not os.path.isfile(pub_filepath): - raise EnvironmentError( - "missing public key file; expected file to exist: " + pub_filepath - ) + # Generate public key from private key + with open(prv_filepath, "r") as f: + private_key_file = f.read() + private_key = serialization.load_pem_private_key( + bytes(private_key_file, "utf-8"), + password=None, + backend=default_backend(), + ) + public_key = private_key.public_key() + public_key = public_key.public_bytes( + encoding=serialization.Encoding.PEM, + format=serialization.PublicFormat.SubjectPublicKeyInfo, + ) + public_key = public_key.decode("utf-8") + with open(pub_filepath, "w") as f: + f.write(public_key) if not os.path.isfile(prv_filepath): raise EnvironmentError( - "missing public key file; expected file to exist: " + prv_filepath + "missing private key file; expected file to exist: " + prv_filepath ) with open(pub_filepath, "r") as f: diff --git a/keys/key/README.md b/keys/key/README.md new file mode 100644 index 000000000..cdfd6f26e --- /dev/null +++ b/keys/key/README.md @@ -0,0 +1 @@ +# Need this folder for permission reasons inside the container diff --git a/poetry.lock b/poetry.lock index a91239b85..a4f9e5464 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,4 +1,4 @@ -# This file is automatically @generated by Poetry 1.8.3 and should not be changed by hand. +# This file is automatically @generated by Poetry 1.8.2 and should not be changed by hand. [[package]] name = "addict" @@ -250,17 +250,17 @@ files = [ [[package]] name = "boto3" -version = "1.35.6" +version = "1.35.12" description = "The AWS SDK for Python" optional = false python-versions = ">=3.8" files = [ - {file = "boto3-1.35.6-py3-none-any.whl", hash = "sha256:c35c560ef0cb0f133b6104bc374d60eeb7cb69c1d5d7907e4305a285d162bef0"}, - {file = "boto3-1.35.6.tar.gz", hash = "sha256:b41deed9ca7e0a619510a22e256e3e38b5f532624b4aff8964a1e870877b37bc"}, + {file = "boto3-1.35.12-py3-none-any.whl", hash = "sha256:acaa7c75cbf483605e3c46e9ac03043a4cf5e9866940122d68b06d1defe00774"}, + {file = "boto3-1.35.12.tar.gz", hash = "sha256:b32faab174f6f9b75fada27bcf054ab3e8846bd410ed9817d0b511109326b6b1"}, ] [package.dependencies] -botocore = ">=1.35.6,<1.36.0" +botocore = ">=1.35.12,<1.36.0" jmespath = ">=0.7.1,<2.0.0" s3transfer = ">=0.10.0,<0.11.0" @@ -269,13 +269,13 @@ crt = ["botocore[crt] (>=1.21.0,<2.0a0)"] [[package]] name = "botocore" -version = "1.35.6" +version = "1.35.12" description 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