From 3d982c40641ad9afbbd12fa369247ddb5a12648d Mon Sep 17 00:00:00 2001
From: zhongzheng1999 <83148558+zhongzheng1999@users.noreply.github.com>
Date: Thu, 8 Aug 2024 00:05:02 +0800
Subject: [PATCH] Update preprocessing.py (#402)
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Ensure essential packages are not detached.

Co-authored-by: Michaela Müller <51025211+mumichae@users.noreply.github.com>
---
 scib/preprocessing.py | 10 +++++-----
 1 file changed, 5 insertions(+), 5 deletions(-)

diff --git a/scib/preprocessing.py b/scib/preprocessing.py
index cbcec346..c91bac1b 100644
--- a/scib/preprocessing.py
+++ b/scib/preprocessing.py
@@ -345,11 +345,11 @@ def normalize(
 
     # Free memory in R
     ro.r("rm(list=ls())")
-    ro.r("lapply(names(sessionInfo()$loadedOnly), require, character.only = TRUE)")
-    ro.r(
-        'invisible(lapply(paste0("package:", names(sessionInfo()$otherPkgs)), '
-        "detach, character.only=TRUE, unload=TRUE))"
-    )
+    # ro.r("lapply(names(sessionInfo()$loadedOnly), require, character.only = TRUE)")
+    # ro.r(
+    #     'invisible(lapply(paste0("package:", names(sessionInfo()$otherPkgs)), '
+    #     "detach, character.only=TRUE, unload=TRUE))"
+    # )
     ro.r("gc()")
 
     anndata2ri.deactivate()