From 2da53ac2762a9bfe338b97491b3e6938eb071160 Mon Sep 17 00:00:00 2001 From: Jarvanerp Date: Fri, 11 Nov 2016 11:21:53 +0100 Subject: [PATCH] Change name of DataTypeRetrieved to Datatypes for frontend consistency --- .../transmartproject/db/RestExportService.groovy | 14 +++++++------- .../{DataTypeRetrieved.groovy => Datatypes.groovy} | 2 +- 2 files changed, 8 insertions(+), 8 deletions(-) rename src/groovy/org/transmartproject/export/{DataTypeRetrieved.groovy => Datatypes.groovy} (88%) diff --git a/grails-app/services/org/transmartproject/db/RestExportService.groovy b/grails-app/services/org/transmartproject/db/RestExportService.groovy index dcb4baa9..4196ad69 100644 --- a/grails-app/services/org/transmartproject/db/RestExportService.groovy +++ b/grails-app/services/org/transmartproject/db/RestExportService.groovy @@ -10,7 +10,7 @@ import org.transmartproject.core.exceptions.InvalidArgumentsException import org.transmartproject.core.exceptions.NoSuchResourceException import org.transmartproject.core.ontology.ConceptsResource import org.transmartproject.core.ontology.OntologyTerm -import org.transmartproject.export.DataTypeRetrieved +import org.transmartproject.export.Datatypes import org.transmartproject.export.Tasks.DataExportFetchTask import org.transmartproject.export.Tasks.DataExportFetchTaskFactory @@ -32,7 +32,7 @@ class RestExportService { task.getTsv() } - public List retrieveDataTypes(params) { + public List retrieveDataTypes(params) { if (!(params.containsKey('concepts'))) { throw new NoSuchResourceException("No parameter named concepts was given.") } @@ -43,7 +43,7 @@ class RestExportService { def jsonSlurper = new JsonSlurper() def conceptParameters = params.get('concepts').decodeURL() - List dataTypes = [] + List dataTypes = [] try { def conceptArguments = jsonSlurper.parseText(conceptParameters) int cohortNumber = 0 @@ -57,7 +57,7 @@ class RestExportService { } } - private List getDataTypes(Map conceptKeysList, List dataTypes, int cohortNumber) { + private List getDataTypes(Map conceptKeysList, List dataTypes, int cohortNumber) { conceptKeysList.conceptKeys.collect { conceptKey -> getDataType(conceptKey, dataTypes, cohortNumber) } @@ -96,16 +96,16 @@ class RestExportService { List tempDataTypes = dataTypes.collect { it.dataType } if (dataTypeString in tempDataTypes) { int index = tempDataTypes.indexOf(dataTypeString) - DataTypeRetrieved dataType = dataTypes[index] + Datatypes dataType = dataTypes[index] addOntologyTerm(term, dataType, cohortNumber) } else { - DataTypeRetrieved dataType = new DataTypeRetrieved(dataType: dataTypeString, dataTypeCode: dataTypeCode) + Datatypes dataType = new Datatypes(dataType: dataTypeString, dataTypeCode: dataTypeCode) addOntologyTerm(term, dataType, cohortNumber) dataTypes.add(dataType) } } - private void addOntologyTerm(OntologyTerm term, DataTypeRetrieved dataType, int cohortNumberID) { + private void addOntologyTerm(OntologyTerm term, Datatypes dataType, int cohortNumberID) { if (cohortNumberID in dataType.OntologyTermsMap.keySet()) { dataType.OntologyTermsMap[cohortNumberID].add(term) } else { diff --git a/src/groovy/org/transmartproject/export/DataTypeRetrieved.groovy b/src/groovy/org/transmartproject/export/Datatypes.groovy similarity index 88% rename from src/groovy/org/transmartproject/export/DataTypeRetrieved.groovy rename to src/groovy/org/transmartproject/export/Datatypes.groovy index 6d199a07..3220fd5e 100644 --- a/src/groovy/org/transmartproject/export/DataTypeRetrieved.groovy +++ b/src/groovy/org/transmartproject/export/Datatypes.groovy @@ -2,7 +2,7 @@ package org.transmartproject.export import org.transmartproject.core.ontology.OntologyTerm -class DataTypeRetrieved { +class Datatypes { Map> OntologyTermsMap = [:]