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json.js
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let imDir= './data/images/';
export default {
name: 'Microscopy',
id: '1',
parent_id: null,
nodeProps: {
height: 50,
width: 50,
href: imDir+'mic.png'
},
mini_hrefs: [],
mini_info: [],
parent_tag: null,
methods:[0,1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31],
backup_methods:[],
pathProps: {
className: 'link'
},
children: [{
name: 'Culture',
id: '2',
parent_id: '1',
nodeProps: {
height: 50,
width: 50,
href: imDir+'culture_fluo_ex4.png'
},
mini_hrefs: [imDir+'culture_fluo_ex4.png'],
mini_info: [{m_dataset:'BBBC021', m_source:'https://bbbc.broadinstitute.org/BBBC021'}],
parent_tag: null,
methods:[0,3],
backup_methods:[],
pathProps: {
className: 'link'
},
children: [{
name: 'Labelled',
id: '15',
parent_id: '2',
nodeProps: {
height: 50,
width: 50,
href: imDir+'culture_fluo_ex3.png'
},
mini_hrefs: [imDir+'culture_fluo_ex3.png'],
mini_info: [{m_dataset:'BBBC021', m_source:'https://bbbc.broadinstitute.org/BBBC021'}],
parent_tag: 'Culture',
methods:[0,1,2,3,],
backup_methods:[],
children: [{
name: 'Fluo',
id: '17',
parent_id: '15',
nodeProps: {
height: 50,
width: 50,
href: imDir+'culture_fluo.png'
},
mini_hrefs: [imDir+'culture_fluo.png',imDir+'culture_fluo_ex1.png',imDir+'culture_fluo_ex2.png',imDir+'culture_fluo_ex3.png'],
mini_info: [{m_dataset:'BBBC038', m_source:'https://bbbc.broadinstitute.org/BBBC038'},{m_dataset:'BBBC038', m_source:'https://bbbc.broadinstitute.org/BBBC038'},{m_dataset:'BBBC039', m_source:'https://bbbc.broadinstitute.org/BBBC039'},{m_dataset:'BBBC021', m_source:'https://bbbc.broadinstitute.org/BBBC021'}],
parent_tag: 'Culture',
methods:[0,1,2,3,4,9,31,23,24,25,28,27,],
backup_methods:[],
children: []
}, {
name: 'Confocal',
id: '18',
parent_id: '15',
nodeProps: {
height: 50,
width: 50,
href: imDir+'culture_conf.png'
},
mini_hrefs: [imDir+'culture_conf.png',imDir+'culture_conf_ex1.png'],
mini_info: [{m_dataset:'(Univ. Freiburg)', m_source:'http://portal.uni-freiburg.de/core-facility/microscopy/confocal'},{m_dataset:'(Univ. Queensland)', m_source:'https://imb.uq.edu.au/facilities/microscopy/hardware-software/confocal-microscopes'}],
parent_tag: 'Culture',
methods:[0,1,2,3,4,],
backup_methods:[],
children: []
}, {
name: 'BF',
id: '26',
parent_id: '15',
nodeProps: {
height: 50,
width: 50,
href: imDir+'culture_labelledbf.png'
},
mini_hrefs: [imDir+'culture_labelledbf.png'],
mini_info: [{m_dataset:'(Researchgate)', m_source:'https://www.researchgate.net/post/H_E_staining_of_cultured_cells'}],
parent_tag: 'Culture',
methods:[0,1,2,3,],
backup_methods:[],
children: []
}]
}, {
name: 'Label-free',
id: '16',
parent_id: '2',
nodeProps: {
height: 50,
width: 50,
href: imDir+'culture_dic_ex1.png'
},
mini_hrefs: [imDir+'culture_dic_ex1.png'],
mini_info: [{m_dataset:'BIOMAG', m_source:'http://group.szbk.u-szeged.hu/sysbiol/horvath-peter-lab-index.html'}],
parent_tag: 'Culture',
methods:[],
backup_methods:[0,1,2,3,4,],
children: [{
name: 'BF',
id: '19',
parent_id: '16',
nodeProps: {
height: 50,
width: 50,
href: imDir+'culture_bf.png'
},
mini_hrefs: [imDir+'culture_bf.png',imDir+'culture_bf_ex1.png'],
mini_info: [{m_dataset:'(Medium)', m_source:'https://medium.com/@kerimov.nurlan/anomaly-detection-in-brightfield-microscopy-images-c92cdddafcc3'},{m_dataset:'BIOMAG', m_source:'http://group.szbk.u-szeged.hu/sysbiol/horvath-peter-lab-index.html'}],
parent_tag: 'Culture',
methods:[0,1,2,3,4,],
backup_methods:[],
children: []
}, {
name: 'DIC',
id: '20',
parent_id: '16',
nodeProps: {
height: 50,
width: 50,
href: imDir+'culture_dic.png'
},
mini_hrefs: [imDir+'culture_dic.png',imDir+'culture_dic_ex1.png'],
mini_info: [{m_dataset:'BIOMAG', m_source:'http://group.szbk.u-szeged.hu/sysbiol/horvath-peter-lab-index.html'},{m_dataset:'BIOMAG', m_source:'http://group.szbk.u-szeged.hu/sysbiol/horvath-peter-lab-index.html'}],
parent_tag: 'Culture',
methods:[0,],
backup_methods:[],
children: []
}, {
name: 'PC',
id: '21',
parent_id: '16',
nodeProps: {
height: 50,
width: 50,
href: imDir+'culture_pc.png'
},
mini_hrefs: [imDir+'culture_pc.png',imDir+'culture_pc_ex1.png',imDir+'culture_pc_ex2.png'],
mini_info: [{m_dataset:'(internet)', m_source:'https://microscope-microscope.org/microscope-info/phase-contrast-microscope/'},{m_dataset:'(HexaBiogen)', m_source:'https://www.hexabiogen.com/astrocytes-de-souris-436/mouse-astrocytes-from-cd1-ma-put-2000619.html'},{m_dataset:'Galen et al.', m_source:'https://www.jci.org/articles/view/111300'}],
parent_tag: 'Culture',
methods:[0,4,],
backup_methods:[],
children: []
}]
}]
}, {
name: 'Tissue',
id: '3',
parent_id: '1',
nodeProps: {
height: 50,
width: 50,
href: imDir+'tissue_bf_ex5.png'
},
mini_hrefs: [imDir+'tissue_bf_ex5.png'],
mini_info: [{m_dataset:'BBBC038', m_source:'https://bbbc.broadinstitute.org/BBBC038'}],
parent_tag: null,
methods:[],
backup_methods:[0,9,31,23],
pathProps: {
className: 'link'
},
children: [{
name: 'Labelled',
id: '5',
parent_id: '3',
nodeProps: {
height: 50,
width: 50,
href: imDir+'tissue_bf_ex4.png'
},
mini_hrefs: [imDir+'tissue_bf_ex4.png'],
mini_info: [{m_dataset:'TCGA', m_source:'https://osf.io/rs67v/?pid=nqtys'}],
parent_tag: 'Tissue',
methods:[],
backup_methods:[0,1,2,3,4,28,27,],
children: [{
name: 'Fluo',
id: '7',
parent_id: '5',
nodeProps: {
height: 50,
width: 50,
href: imDir+'tissue_fluo.png'
},
mini_hrefs: [imDir+'tissue_fluo.png'],
mini_info: [{m_dataset:'BIOMAG', m_source:'http://group.szbk.u-szeged.hu/sysbiol/horvath-peter-lab-index.html'}],
parent_tag: 'Tissue',
methods:[9,31,23,],
backup_methods:[],
children: []
}, {
name: 'Confocal',
id: '8',
parent_id: '5',
nodeProps: {
height: 50,
width: 50,
href: imDir+'tissue_conf.png'
},
mini_hrefs: [imDir+'tissue_conf.png',imDir+'tissue_conf_ex1.png'],
mini_info: [{m_dataset:'(Univ. Bergen)', m_source:'https://www.uib.no/rg/mic/86218/11th-mic-confocal-microscopy-course'},{m_dataset:'(Queen Mary Univ. London)', m_source:'https://www.qmul.ac.uk/ow3-research/facilities-and-resources/amis/items/leica-sp8-confocal.html'}],
parent_tag: 'Tissue',
methods:[],
backup_methods:[0,1,2,3,4,],
children: []
}, {
name: 'Light-sheet',
id: '27',
parent_id: '5',
nodeProps: {
height: 50,
width: 50,
href: imDir+'tissue_ls_ex1.png'
},
mini_hrefs: [imDir+'tissue_ls_ex1.png',imDir+'tissue_ls.png',imDir+'tissue_ls_ex2.png'],
mini_info: [{m_dataset:'BIOMAG', m_source:'http://group.szbk.u-szeged.hu/sysbiol/horvath-peter-lab-index.html'},{m_dataset:'BIOMAG', m_source:'http://group.szbk.u-szeged.hu/sysbiol/horvath-peter-lab-index.html'},{m_dataset:'BIOMAG', m_source:'http://group.szbk.u-szeged.hu/sysbiol/horvath-peter-lab-index.html'}],
parent_tag: 'Tissue',
methods:[0,3,],
backup_methods:[],
children: []
}, {
name: 'BF',
id: '28',
parent_id: '5',
nodeProps: {
height: 50,
width: 50,
href: imDir+'tissue_bf.png'
},
mini_hrefs: [imDir+'tissue_bf.png',imDir+'tissue_bf_ex4.png',imDir+'tissue_bf_ex3.png',imDir+'tissue_bf_ex2.png'],
mini_info: [{m_dataset:'TCGA', m_source:'https://osf.io/rs67v/?pid=nqtys'},{m_dataset:'TCGA', m_source:'https://osf.io/rs67v/?pid=nqtys'},{m_dataset:'BBBC038', m_source:'https://bbbc.broadinstitute.org/BBBC038'},{m_dataset:'TCGA', m_source:'https://zenodo.org/record/1174353#.YPsGEOhLiUk'}],
parent_tag: 'Tissue',
methods:[0,1,2,3,28,27,],
backup_methods:[],
children: []
}]
}, {
name: 'Label-free',
id: '6',
parent_id: '3',
nodeProps: {
height: 50,
width: 50,
href: imDir+'tissue_dic_ex1.png'
},
mini_hrefs: [imDir+'tissue_dic_ex1.png'],
mini_info: [{m_dataset:'BIOMAG', m_source:'http://group.szbk.u-szeged.hu/sysbiol/horvath-peter-lab-index.html'}],
parent_tag: 'Tissue',
methods:[],
backup_methods:[0,],
children: [{
name: 'DIC',
id: '10',
parent_id: '6',
nodeProps: {
height: 50,
width: 50,
href: imDir+'tissue_dic.png'
},
mini_hrefs: [imDir+'tissue_dic.png',imDir+'tissue_dic_ex1.png'],
mini_info: [{m_dataset:'BIOMAG', m_source:'http://group.szbk.u-szeged.hu/sysbiol/horvath-peter-lab-index.html'},{m_dataset:'BIOMAG', m_source:'http://group.szbk.u-szeged.hu/sysbiol/horvath-peter-lab-index.html'}],
parent_tag: 'Tissue',
methods:[0,],
backup_methods:[],
children: []
}]
}]
}]
};