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.Rprofile
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.Rprofile
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# Circumvent srcref issue https://github.com/rstudio/renv/issues/1713
options("install.opts" = "--without-keep.source")
if (file.exists("renv/activate.R")) {
source("renv/activate.R")
} else {
message("Found no renv/activate.R!")
}
# Using active config as set per R_CONFIG_ACTIVE env var, see config.yml
# See https://rstudio.github.io/config/articles/config.html
local({
config_profile = Sys.getenv('R_CONFIG_ACTIVE', 'default')
cli::cli_alert_info("Loading config {.val {config_profile}}")
})
conf = config::get()
# Trying to ensure learners don't use more resources than they should
# For e.g. XGBoost
Sys.setenv(OMP_NUM_THREADS = 1)
Sys.setenv(OPENBLAS_NUM_THREADS = 1)
Sys.setenv(OMP_THREAD_LIMIT = 1)
# Unsure, MKL is an Intel-specific thing
Sys.setenv(MKL_NUM_THREADS = 1)
# Package-specific settings
try(data.table::setDTthreads(1))
options(
datatable.print.class = TRUE,
datatable.print.keys = TRUE,
batchtools.progress = TRUE
)
# Load script with helpers here to ensure its contents are available always
source("helpers.R")
# Make renv pick up learner dependencies
if (FALSE) {
library("survival")
library("pracma")
library("glmnet")
library("penalized")
library("flexsurv")
library("randomForestSRC")
library("ranger")
library("partykit")
library("sandwich")
library("coin")
library("aorsf")
library("rpart")
library("mboost")
library("xgboost")
library("survivalsvm")
library("pseudo")
library("DiceKriging")
library("rgenoud")
library("actuar") # For surv.parametric
library("mlr3batchmark") # on CRAN now with v0.1.0
library("distr6")
library("mlr3proba")
library("mlr3extralearners")
library("CoxBoost")
library("survivalmodels")
library("callr")
require("config")
# For datasets
library("frailtyHL")
library("simPH")
library("smcure")
library("dynpred")
}