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CHANGELOG
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CHANGELOG
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dev:
* add ORF finding functions and methods
* BioSeq.match: rename orf option to rf, allow tuple-like arguments
* consequently rename BioSeq.meta.features to BioSeq.meta.fts
* add BioBasket.fts attribute, add add_fts method for BioSeq and BioBasket
* add final_stop parameter in translate
* refactoring, add sugar.core.cane module with seq and ft tools
* io:
- add option to store comments in most readers
- refactor and update read support for BLAST files (outfmt 6, 7 and 10)
- add read support for MMseqs2 files (fmtmode 0 and 4)
- add read support for Infernal tblout files
- stockholm: add support for multiline files
v0.3.0:
* io.fasta: robust parsing of seq ids from header line, ignore comment lines
* io.stockholm: add row2fts and fts2row functions to parse, write GC and similar lines
v0.2.1:
* translate: add check_start option
v0.2.0:
* io: add option to write files automatically into an archive
* io.gff: allow to store comment lines while reading
* scripts: add translate and feature commands
v0.1.0:
* initial release