jimbo seus spp.key corrections

[rBatt]

from Jim Morley, edits by me:

# spp is the original species name_I think trawldata changes them to something else, but they are actual species

# RDB: these used to look like 
# dat$species[dat$spp == "ISURUS OXYRINCHUS"] <- "isurus oxyrinchus"
# so i'm assuming jimbo's "spp" is my "ref", and jimbo's "species" is my "spp"

jimboCorrections <- rbind(
	data.table(ref="ISURUS OXYRINCHUS", spp="isurus oxyrinchus"),
	data.table(ref="CARCHARHINUS SIGNATUS", spp="carcharhinus signatus"),
	data.table(ref="CAULOLATILUS CYANOPS", spp="caulolatilus cyanops"),
	data.table(ref="OCYURUS CHRYSURUS", spp="ocyurus chrysurus"),
	data.table(ref="CITHARICHTHYS GYMNORHINUS", spp="citharichthys gymnorhinus"),
	data.table(ref="SYNODUS INTERMEDIUS", spp="synodus intermedius"),
	data.table(ref="HOLACANTHUS CILIARIS", spp="holacanthus ciliaris"),
	data.table(ref="MYCTEROPERCA BONACI", spp="mycteroperca bonaci"),
	
	data.table(ref="Beringius frielei", spp="beringius frielei"),
	data.table(ref="Volutopsius castaneus", spp="volutopsius castaneus"),
	data.table(ref="Colus aphelus", spp="latisipho aphelus"),
	data.table(ref="OGCOCEPHALUS RADIATUS", spp="ogcocephalus radiatus"),
	data.table(ref="RAJA GARMANI", spp="leucoraja garmani"),
	data.table(ref="SQUILLA BRASILIENSIS", spp="squilla brasiliensis"),
	data.table(ref="DECAPTERUS TABL", spp="decapterus tabl"),
	data.table(ref="PORTUNUS ORDWAYII", spp="achelous ordwayi"),
	data.table(ref="CALAMUS PENNA", spp="calamus penna"),
	data.table(ref="PRIONOTUS PUNCTATUS", spp="prionotus punctatus"),
	data.table(ref="HAEMULON PARRAI", spp="haemulon parra"),
	data.table(ref="PONTINUS RATHBUNI", spp="pontinus rathbuni"),
	data.table(ref="SCORPAENA INERMIS", spp="scorpaena inermis"),
	data.table(ref="SARDINELLA BRASILIENSIS", spp="sardinella brasiliensis"),
	data.table(ref="RHINOPTERA BRASILIENSIS", spp="rhinoptera brasiliensis"),
	data.table(ref="STEPHANOLEPIS SETIFER", spp="stephanolepis setifer"),
	data.table(ref="CHICOREUS", spp="chicoreus"),
	data.table(ref="PTEROIS VOLITANS", spp="pterois volitans"),
	data.table(ref="CITHARICHTHYS DINOCEROS", spp="citharichthys dinoceros"),
	data.table(ref="SQUILLA RUGOSA", spp="squilla rugosa"),
	data.table(ref="TRACHINOTUS GOODEI", spp="trachinotus goodei"),
	data.table(ref="ECHINASTER SPINULOSUS", spp="echinaster brasiliensis"),
	data.table(ref="MONACANTHUS TUCKERI", spp="monacanthus tuckeri"),
	data.table(ref="CALAMUS CAMPECHANUS", spp="calamus campechanus"),
	data.table(ref="OGCOCEPHALUS CUBIFRONS", spp="ogcocephalus cubifrons"),
	data.table(ref="ARIOMMA", spp="ariomma"),
	data.table(ref="SPARISOMA CHRYSOPTERUM", spp="sparisoma chrysopterum"),
	data.table(ref="ANTENNARIUS MULTIOCELLATUS", spp="antennarius multiocellatus"),
	data.table(ref="loligo opalescens", spp="doryteuthis opalescens" ), # name change, but taxon grouping appears to be right
	data.table(ref="Neptunea middendorffii", spp="neptunea middendorffiana"),
	data.table(ref="CHLOEIA", spp="chloeia"),
	data.table(ref="OSTICHTHYS", spp="ostichthys"),
	data.table(ref="MYCTEROPERCA VENENOSA", spp="mycteroperca venenosa"),
	data.table(ref="OLIVA SCRIPTA", spp="oliva scripta"),
	data.table(ref="XYRICHTYS", spp="xyrichtys"),
	data.table(ref="BOTHUS OCELLATUS", spp="bothus ocellatus"),
	data.table(ref="Squalus suckleyi", spp="squalus suckleyi"),
	data.table(ref="Glyptocephalus zachirus larvae", spp="glyptocephalus zachirus larvae"),
	
	data.table(ref="PANDALUS BOREALIS(M-MATURE)", spp="pandalus borealis"), # A naming error
	data.table(ref="PORONOTUS (PEPRILUS) TRIACANTHUS", spp="peprilus triacanthus"), # A naming error
	data.table(ref="TROMIKOSOMA PANAMENSE(soft deep sea urchin)", spp="tromikosoma panamense"), # A naming error
	data.table(ref="PSEUDOARCHASTER PARELII(orange star)", spp="pseudarchaster parelii") # A naming error
)

[rBatt]

related to #57 #1

[rBatt]

These can all be edited with ref2spp() in trawlData/pkgBuild/R/helper-tax.R