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Changelog

This project adheres to Semantic Versioning.

For information about newer versions please refer to our GitHub releases

1.10.4 (2022-01-04)

Added

Fixed

  • CVE-2021-44832

Dependencies

  • org.apache.logging.log4j:log4j-core:2.17.0 -> 2.17.1
  • org.apache.logging.log4j:log4j-api:2.17.0 -> 2.17.1

Deprecated

1.10.3 (2021-12-20)

Added

Fixed

  • CVE-2021-45105

Dependencies

  • org.apache.logging.log4j:log4j-api:2.16.0 -> 2.17.0
  • org.apache.logging.log4j:log4j-core:2.16.0 -> 2.17.0

Deprecated

1.10.2 (2021-12-16)

Added

Fixed

  • CVE-2021-45046

Dependencies

  • micronaut-http-client:io.micronaut:1.2.11 -> 2.5.13
  • spock-core:org.spockframework:1.3-groovy-2.5 -> 2.0-groovy-2.5
  • org.mockito:mockito-all:1.8.4 -> 1.10.19
  • org.mockito:mockito-core:2.18.3 -> 4.1.0
  • org.powermock:powermock-reflect:1.6.1 -> 2.0.9
  • org.apache.commons:commons-lang3:3.7 -> 3.12.0
  • org.apache.logging.log4j:log4j-api:2.15.0 -> 2.16.0
  • org.apache.logging.log4j:log4j-core:2.15.0 -> 2.16.0

Deprecated

1.10.1 (2021-12-13)

Added

Fixed

  • CVE-2021-44228

Dependencies

  • org.apache.logging.log4j:log4j-api:2.13.2 -> 2.15.0
  • org.apache.logging.log4j:log4j-core:2.13.2 -> 2.15.0

Deprecated

1.10.0 (2021-09-13)

Added

  • Update 'life.qbic.utils.MaxQuantParser', parsing the summary file from a new summary folder (#74)

Fixed

Dependencies

Deprecated

1.9.3 (2021-07-20)

Added

Fixed

  • Checks life.qbic.datasets.parsers.DatasetValidationException argument for null, throws an NPE immediately.
  • Remove DatasetValidationException signature from adaptMapToDatasetStructure method in life.qbic.utils.MaxQuantParser.groovy

Dependencies

Deprecated

1.9.2 (2021-07-20)

Added

Fixed

  • Removes orphaned log statement
  • Update 'life.qbic.utils.MaxQuantParser', parsing the summary file from a new summary folder (#74)

Dependencies

Deprecated

1.9.1 (2021-07-20)

Added

Fixed

  • Removes unnecessary print and log statements in several parsers (#65)

Dependencies

Deprecated

1.9.0 (2021-07-19)

Added

  • Introduce life.qbic.utils.MaxQuantParser to validate the filestructure resulting from a maxQuant run (#60)

Fixed

  • Ensures, that the BioinformaticAnalysisParser throws only exceptions as stated in the DataSetParser interface (#62)

Dependencies

Deprecated

1.8.0 (2021-05-07)

Added

  • Add qube support (#39)
  • Add DatasetParser as interface for parsing datasets life/qbic/datasets/parsers/DatasetParser.groovy (#49)
  • Add ImagingMetadataValidator for validating json files containing imaging metadata life/qbic/utils/ImagingMetadataValidator.groovy, with test life/qbic/utils/ImagingMetadataValidatorSpec.groovy (#48)
  • Add BioinformaticAnalaysisParser to validate the filestructure resulting from Nfcore pipeline output life.qbic.utils.BioinformaticAnalysisParser (#51)

Fixed

Dependencies

  • Upgrade life.qbic:groovy:data-model-lib:jar:2.4.0 -> 2.7.0
  • Downgrade java 11 -> java 8
  • Remove parent-pom and introduce a slim own definition of dependencies.
  • Re-introduce org.apache.commons.commons-lang3 dependency with version 3.7.0

Deprecated

1.7.2 (2021-05-07)

Added

  • Use data-model-lib version 2.4.0
  • Introduce secure connection to new nexus repository

Fixed

Dependencies

Deprecated

1.7.0 (2021-05-07)

Added

  • Introduced new generic interface life.qbic.datasets.parsers.DatasetParser that can be used to

implement dataset parsers for different dataset types.

Fixed

Dependencies

Deprecated

0.1.0 (2020-12-02)

Added

  • Created the project using cookietemple

Fixed

Dependencies

Deprecated