Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

How to run scaladbg? #3

Open
ehsanb29 opened this issue Jul 18, 2021 · 0 comments
Open

How to run scaladbg? #3

ehsanb29 opened this issue Jul 18, 2021 · 0 comments

Comments

@ehsanb29
Copy link

ehsanb29 commented Jul 18, 2021

Hi, I did everything exactly as what you suggest to configure it.
and try to run with idba_ud with mpirun like this:
mpirun -np 2 bin/idba_ud -r <read_file.fa> -o <output_dir> --mink 21 --maxk 51 --step 10 --num_threads 4

but it writes this lines:
number of threads 4
reads 24185108
long reads 0
extra reads 0
Read Time (ReadSequence) was 40.958076 seconds
read_length 83

and don't do anything !!!
what's the problem? I'm appreciate to help me.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant